View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16948_low_4 (Length: 665)
Name: NF16948_low_4
Description: NF16948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16948_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 145; Significance: 6e-76; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 159 - 348
Target Start/End: Complemental strand, 4150882 - 4150693
Alignment:
| Q |
159 |
attcaatccttactaaaggagcatcagagagagttgtaatgtatctacagacatttcataacaagagagactaagggaaataaaacaaaaaggccaaatc |
258 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4150882 |
attcaatccttactatacgagcatcagagagagttgtaatgtatctacagacatttcataacaagagagaccaagggaaataaaacaaaaaggccaaatc |
4150783 |
T |
|
| Q |
259 |
agaatgnnnnnnngttcttaaaagtttaatgcatatttaccttgtcaagtctatgatctcagcctttgccaagggtgactttttcagcaa |
348 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
4150782 |
agaatgaaaaaaagttctgaaaagtttaatgcatatttaccttgtcaagtctatgatctcagcctttgctaagggtgacttttgcagcaa |
4150693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 159 - 348
Target Start/End: Complemental strand, 4166651 - 4166462
Alignment:
| Q |
159 |
attcaatccttactaaaggagcatcagagagagttgtaatgtatctacagacatttcataacaagagagactaagggaaataaaacaaaaaggccaaatc |
258 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4166651 |
attcaatccttactatacgagcatcagagagagttgtaatgtatctacagacatttcataacaagagagaccaagggaaataaaacaaaaaggccaaatc |
4166552 |
T |
|
| Q |
259 |
agaatgnnnnnnngttcttaaaagtttaatgcatatttaccttgtcaagtctatgatctcagcctttgccaagggtgactttttcagcaa |
348 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
4166551 |
agaatgaaaaaaagttctgaaaagtttaatgcatatttaccttgtcaagtctatgatctcagcctttgctaagggtgacttttgcagcaa |
4166462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 532 - 647
Target Start/End: Complemental strand, 4150452 - 4150337
Alignment:
| Q |
532 |
ctatgtttttcctaaaccaatagtcactgaagtacctcaagagtagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaa |
631 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4150452 |
ctatgtttttcctaaaccaatagtcactgaagtacctcaagaatagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaa |
4150353 |
T |
|
| Q |
632 |
gaaccaagggatattt |
647 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
4150352 |
gaaccaagggatattt |
4150337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 4151343 - 4151212
Alignment:
| Q |
19 |
actccgatctcttggaaaaactaatgcacctcataattctctagatagtatccttcatctgaccatgtctgcaaaacccaaatttagatgcaatatatgt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4151343 |
actccgatctcttggaaaaactaatgcacctcataattctctagatagtatccttcacctgaccatgtctgcaaaacccaaatttagatgcaatatatgt |
4151244 |
T |
|
| Q |
119 |
tgcaaataagaccaaaattgaaaacatgaaat |
150 |
Q |
| |
|
||||||| ||||| ||| ||||| |||||||| |
|
|
| T |
4151243 |
tgcaaatcagaccgaaagtgaaagcatgaaat |
4151212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 532 - 647
Target Start/End: Complemental strand, 4166221 - 4166106
Alignment:
| Q |
532 |
ctatgtttttcctaaaccaatagtcactgaagtacctcaagagtagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaa |
631 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4166221 |
ctatgtttttcctaaaccaatagtcactgaagtacctcaagaatagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaa |
4166122 |
T |
|
| Q |
632 |
gaaccaagggatattt |
647 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
4166121 |
gaaccaagggatattt |
4166106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 4167112 - 4166981
Alignment:
| Q |
19 |
actccgatctcttggaaaaactaatgcacctcataattctctagatagtatccttcatctgaccatgtctgcaaaacccaaatttagatgcaatatatgt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4167112 |
actccgatctcttggaaaaactaatgcacctcataattctctagatagtatccttcacctgaccatgtctgcaaaacccaaatttagatgcaatatatgt |
4167013 |
T |
|
| Q |
119 |
tgcaaataagaccaaaattgaaaacatgaaat |
150 |
Q |
| |
|
||||||| ||||| ||| ||||| |||||||| |
|
|
| T |
4167012 |
tgcaaatcagaccgaaagtgaaagcatgaaat |
4166981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 339 - 460
Target Start/End: Complemental strand, 4150645 - 4150524
Alignment:
| Q |
339 |
ttttcagcaatttcaagttttgtaagtaagggaaatcaaccttccataaaccaggaactaagcaaagagtctatacaatgagggagggtgaatcatgatc |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
4150645 |
ttttcagcaatttcaagttttgtaagtaagggaaatcaaccttccataaaccaggaactgagcaaagagtctatgcaacgagggagggtgaatcatgatc |
4150546 |
T |
|
| Q |
439 |
aatttaaagcaagtcatgtttt |
460 |
Q |
| |
|
| ||||| |||||||||||||| |
|
|
| T |
4150545 |
agtttaaggcaagtcatgtttt |
4150524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 339 - 460
Target Start/End: Complemental strand, 4166414 - 4166293
Alignment:
| Q |
339 |
ttttcagcaatttcaagttttgtaagtaagggaaatcaaccttccataaaccaggaactaagcaaagagtctatacaatgagggagggtgaatcatgatc |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
4166414 |
ttttcagcaatttcaagttttgtaagtaagggaaatcaaccttccataaaccaggaactgagcaaagagtctatgcaacgagggagggtgaatcatgatc |
4166315 |
T |
|
| Q |
439 |
aatttaaagcaagtcatgtttt |
460 |
Q |
| |
|
| ||||| |||||||||||||| |
|
|
| T |
4166314 |
agtttaaggcaagtcatgtttt |
4166293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 561 - 638
Target Start/End: Original strand, 13490165 - 13490242
Alignment:
| Q |
561 |
aagtacctcaagagtagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaagaaccaa |
638 |
Q |
| |
|
|||||||| |||||||| |||||| || ||||||||||| ||| || |||||||||||||||||||| |||||||| |
|
|
| T |
13490165 |
aagtacctgaagagtagttgaagacacagtcaatgattcaatattagcaagctcaactagccagttgagcagaaccaa |
13490242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 561 - 628
Target Start/End: Original strand, 777419 - 777486
Alignment:
| Q |
561 |
aagtacctcaagagtagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttga |
628 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| |||||||||| || ||||||||||||||| |||| |
|
|
| T |
777419 |
aagtacctcaagagtatttgaagacactgtcagtgattcgatattagcaagctcaactagccaattga |
777486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 7021054 - 7021004
Alignment:
| Q |
86 |
tctgcaaaacccaaatttagatgcaatatatgttgcaaataagaccaaaat |
136 |
Q |
| |
|
|||| |||||| ||||||||| |||||||||||||||||| |||| ||||| |
|
|
| T |
7021054 |
tctgtaaaacctaaatttagaggcaatatatgttgcaaatcagacaaaaat |
7021004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University