View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16948_low_7 (Length: 564)
Name: NF16948_low_7
Description: NF16948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16948_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 545
Target Start/End: Complemental strand, 26130782 - 26130238
Alignment:
| Q |
1 |
atgcagactagtttgcgatcactggagaaatcggcagaaattcagttcacaaaggagatatttgtcatgtttcggtctattatgaaaagatcaatgcttc |
100 |
Q |
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| T |
26130782 |
atgcaaactagtttgcgatcactggagaaatcggcagaaattcagttcacaaaggagatatttgtcatgtttcggtctattatgaaaagatcaatgcttc |
26130683 |
T |
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| Q |
101 |
ttaaaattacagaatgccacgaaatgtctacgtggtatattttcacagtttcaacatattgtggggatggtagtgtttggcgtgtagcatactgtcaaga |
200 |
Q |
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| T |
26130682 |
ttaaaatgacagaatgccacgaaatgtctacgtggtatattttcacagtttcaaaatattgtggtgatggtagtgtttggcgtgtagcatgctgtcaaga |
26130583 |
T |
|
| Q |
201 |
accaattgatctgaaatgctcatgttttagaatggaatcaattggattgccatgtcatcatattctagctgtgctattgtatcttgattttgatgatctt |
300 |
Q |
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| T |
26130582 |
accaattgatctgaaatgctcatgttttagaatggaatcaattggattgccatgtcatcatattctatctgtgctattgtatcttgattttgatgatctt |
26130483 |
T |
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| Q |
301 |
ccaaagtgcttggttatgccaaggtggtccaagtttgcttgcatcagtcacatcaatgttgggcagacacaatctccaatgacaactgaagatgaaattc |
400 |
Q |
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| T |
26130482 |
ccaaagtgcttggttatgcctaggtggtccaagtttgcttgcatcagtcacatcaatgttgggcagacacaatctccaatttcaactgaagatgaaattc |
26130383 |
T |
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| Q |
401 |
aagaacacgaggattcgtacaactctgagaatgattatgtaagtgaatgtttaatatctgtaattggaggcttagtattttttaattatacttgattgat |
500 |
Q |
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| T |
26130382 |
aggaacacgaggattcgtacaactctgagaatgattatgtaagtgaatgtttaatatctgtaattggaggcttagtattttttaattatacttgattgat |
26130283 |
T |
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| Q |
501 |
attattaatatgtctggtatttgtgcatgttctgtatctatccat |
545 |
Q |
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| T |
26130282 |
attattaatatgtctggtatttgtgcatgttctgtatctatccat |
26130238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 83 - 340
Target Start/End: Original strand, 11010893 - 11011150
Alignment:
| Q |
83 |
tgaaaagatcaatgcttcttaaaattacagaatgccacgaaatgtctacgtggtatattttcacagtttcaacatattgtggggatggtagtgtttggcg |
182 |
Q |
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| T |
11010893 |
tgaaaagatcattgcttcttagagttacagaaagccaagaaatttccatggggtatattttcacgatttcaaaataccgtggtgatggtagggtttggca |
11010992 |
T |
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| Q |
183 |
tgtagcatactgtcaagaaccaattgatctgaaatgctcatgttttagaatggaatcaattggattgccatgtcatcatattctagctgtgctattgtat |
282 |
Q |
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| T |
11010993 |
tgtgacatattgtgaagaaccagttgttttaaaatgctcgtgtcttagaatggaatcgcttggtttgctgtgtgatcatattcttgttgttcttctgtat |
11011092 |
T |
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| Q |
283 |
cttgattttgatgatcttccaaagtgcttggttatgccaaggtggtccaagtttgctt |
340 |
Q |
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| T |
11011093 |
cttgattttgatgatcttccaaaatgtttggttttgcaaaggtggtccaagtttgctt |
11011150 |
T |
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