View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16949_high_1 (Length: 477)
Name: NF16949_high_1
Description: NF16949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16949_high_1 |
 | |
|
| [»] scaffold0227 (2 HSPs) |
| | |
|
| [»] scaffold1195 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 12 - 463
Target Start/End: Complemental strand, 29526844 - 29526393
Alignment:
| Q |
12 |
agcagcagagaaaaatgaggaaaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagacc |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29526844 |
agcagaagagaaaaatgaggaaaaggtagagaatgcagaagaaagggatgcggaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagacc |
29526745 |
T |
|
| Q |
112 |
aaagcagatctgtgcaaatttcttggtatcgacagactcttttatgaacatggtatgggtagtgtgtccgaatcgagggagaaattgcctagaaaaacta |
211 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
29526744 |
aaagcagatctgcgcaaatttcttggtatcgacagactcttttatgaacatggtatgagtagtgtgttcgaatcgagggcgaaattgcctagaaaaacta |
29526645 |
T |
|
| Q |
212 |
tcggagagggatgggtttcactcgagttgggcggcctacctccaccaccgccaaagccgctagatccagatgtgtttgtggtgaagggtggattatcctc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29526644 |
tcggagagggatgggtttcactcgagttgggcggcctacctccaccgccgccaaagccgccagatccagacgtgtttgtggtgaagggtggattatcctc |
29526545 |
T |
|
| Q |
312 |
tggtttgatcgaactggcactgtgcctattgctgccaaaaattcctccccagaagagagtgtctgatgcatgcattagttatcatgtttcacaccttgct |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29526544 |
tggtttgatcgaactggcactgtgcctattgctgccaaaaattcctccccagaagagagtgtctgatgcatgcattagttatcatgtttcacaccttgct |
29526445 |
T |
|
| Q |
412 |
ctgacactctacttcaagttatgggaccctggtggacacttatgttatcctt |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29526444 |
ctgacactctacttcaagttatgggaccctggtggacacttatgtcatcctt |
29526393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 63 - 463
Target Start/End: Complemental strand, 39702372 - 39701963
Alignment:
| Q |
63 |
agaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagcagatctgtgcaaatttcttggtatcgacagactcttttatgaacat |
162 |
Q |
| |
|
||||| |||||| ||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||| ||| ||| ||| |||||||| |
|
|
| T |
39702372 |
agaaagttcctctgtgaatgtcatcaatgtggaaaagcaacaagagaccaaagtagatttgtgcaaatttcttggtatcaacaaactatttgatgaacat |
39702273 |
T |
|
| Q |
163 |
ggtatgggtagtgtgtccgaatcgagggagaaattgcctagaaaaactatcggagagggatgggtttcactcgagttgggcggcctacctccaccaccgc |
262 |
Q |
| |
|
|| || ||| ||||| ||||| ||||| | ||||||||||| ||||| ||||||||||||||||||||| ||||||| |||||| |||| |||||| |
|
|
| T |
39702272 |
ggcgtgagtattgtgttcgaattgagggtgggattgcctagaacaactaccggagagggatgggtttcacttgagttggacggcct---tccagcaccgc |
39702176 |
T |
|
| Q |
263 |
caaagccgctagatccagatgtgtttgtggtgaagggtggattatcctctggtttgatcgaactggcactgtgcctattgctgc---------------c |
347 |
Q |
| |
|
| | | | ||||||| | | ||||| ||||||||||||||| |||||||||||||| ||||||||||| | | ||||||||| | |
|
|
| T |
39702175 |
c---gtcaccagatccaaacgcgtttgcggtgaagggtggattgtcctctggtttgattgaactggcactattcttattgctgccactttcttttggatc |
39702079 |
T |
|
| Q |
348 |
aaaaattcctccccagaagagagtgtctgatgcatgcattagttatcatgtttcacaccttgctctgacactctacttcaagttatgggaccctggtgga |
447 |
Q |
| |
|
|||||| || ||||| || ||||||| |||| |||||||||||||||| ||||||| |||||||||| || | ||||||||||| ||||||||||||||| |
|
|
| T |
39702078 |
aaaaataccaccccaaaatagagtgtttgatccatgcattagttatcaggtttcacgccttgctctgtcattgtacttcaagttttgggaccctggtgga |
39701979 |
T |
|
| Q |
448 |
cacttatgttatcctt |
463 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
39701978 |
cacttatattatcctt |
39701963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 12 - 463
Target Start/End: Original strand, 6081821 - 6082272
Alignment:
| Q |
12 |
agcagcagagaaaaatgaggaaaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagacc |
111 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6081821 |
agcagaagagaaaaatgaggaaaaggcagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagacc |
6081920 |
T |
|
| Q |
112 |
aaagcagatctgtgcaaatttcttggtatcgacagactcttttatgaacatggtatgggtagtgtgtccgaatcgagggagaaattgcctagaaaaacta |
211 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
6081921 |
aaagcagatctgcgcaaatttcttggtatcgacagactcttttatgaacatggtatgagtagtgtgttcgaatcgagggcgaaattgcctagaaaaacta |
6082020 |
T |
|
| Q |
212 |
tcggagagggatgggtttcactcgagttgggcggcctacctccaccaccgccaaagccgctagatccagatgtgtttgtggtgaagggtggattatcctc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6082021 |
tcggagagggatgggtttcactcgagttgggcggcctacctccaccgccgccaaggcccccagatccagacgtgtttgtggtgaagggtggattatcctc |
6082120 |
T |
|
| Q |
312 |
tggtttgatcgaactggcactgtgcctattgctgccaaaaattcctccccagaagagagtgtctgatgcatgcattagttatcatgtttcacaccttgct |
411 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6082121 |
tggtttgatcaaactggcactgtgcctattgctgccaaaaattcctccccagaagagagtgtctgatgtatgcattagttatcatgtttcacaccttgct |
6082220 |
T |
|
| Q |
412 |
ctgacactctacttcaagttatgggaccctggtggacacttatgttatcctt |
463 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6082221 |
ctgtcactctacttcaagttatgggaccctggtggacacttatgttatcctt |
6082272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 15432485 - 15432551
Alignment:
| Q |
21 |
gaaaaatgaggaaaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatc |
87 |
Q |
| |
|
||||||||||||||||| |||||| ||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
15432485 |
gaaaaatgaggaaaaggcagagaatgcataagaaagggatgcagaaaattcctctgtgaatgtcatc |
15432551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 15490838 - 15490904
Alignment:
| Q |
21 |
gaaaaatgaggaaaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatc |
87 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
15490838 |
gaaaaatgaggaaaaggtagagaatgcataagaaagggatgcagaaaaatcctctgtgaatgtcatc |
15490904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 15567501 - 15567570
Alignment:
| Q |
18 |
agagaaaaatgaggaaaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatc |
87 |
Q |
| |
|
||||||||| ||||||||||||||||| ||| || |||||||||||||||||||||| ||||||| |||| |
|
|
| T |
15567501 |
agagaaaaacgaggaaaaggtagagaatgcataataaagggatgcagaaaattcctctgtgaatgccatc |
15567570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 463
Target Start/End: Original strand, 13078342 - 13078411
Alignment:
| Q |
394 |
catgtttcacaccttgctctgacactctacttcaagttatgggaccctggtggacacttatgttatcctt |
463 |
Q |
| |
|
|||| ||||||| ||||||| || | |||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
13078342 |
catgattcacacagtgctctgtcattatacttcaagttatgggacccaggtggacacttatgatatcctt |
13078411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 12 - 463
Target Start/End: Original strand, 10583320 - 10583770
Alignment:
| Q |
12 |
agcagcagagaaaaatgaggaaaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagacc |
111 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10583320 |
agcagaagagaaaaatgaggaaaaggcagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagacc |
10583419 |
T |
|
| Q |
112 |
aaagcagatctgtgcaaatttcttggtatcgacagactcttttatgaacatggtatgggtagtgtgtccgaatcgagggagaaattgcctagaaaaacta |
211 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
10583420 |
aaagcagatctgcgcaaatttcttggtatcgacagactcttttatgaacatggtatgagtagtgtgttcgaatcgagggcttc-ttgcctagaaaaacta |
10583518 |
T |
|
| Q |
212 |
tcggagagggatgggtttcactcgagttgggcggcctacctccaccaccgccaaagccgctagatccagatgtgtttgtggtgaagggtggattatcctc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10583519 |
tcggagagggatgggtttcactcgagttgggcggcctacctccaccgccgccaaggcccccagatccagacgtgtttgtggtgaagggtggattatcctc |
10583618 |
T |
|
| Q |
312 |
tggtttgatcgaactggcactgtgcctattgctgccaaaaattcctccccagaagagagtgtctgatgcatgcattagttatcatgtttcacaccttgct |
411 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10583619 |
tggtttgatcaaactggcactgtgcctattgctgccaaaaattcctccccagaagagagtgtctgatgtatgcattagttatcatgtttcacaccttgct |
10583718 |
T |
|
| Q |
412 |
ctgacactctacttcaagttatgggaccctggtggacacttatgttatcctt |
463 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10583719 |
ctgtcactctacttcaagttatgggaccctggtggacacttatgttatcctt |
10583770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 194 - 463
Target Start/End: Original strand, 49122859 - 49123126
Alignment:
| Q |
194 |
aattgcctagaaaaactatcggagagggatgggtttcactcgagttgggcggcctacctccaccaccgccaaagccgctagatccagatgtgtttgtggt |
293 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
49122859 |
aattgcctagaaaaactatcgaagagggatgggtttcactcgagttgggcggcctacctccaccgccgccaaggccgccagatccagacgtgtttgtggt |
49122958 |
T |
|
| Q |
294 |
gaagggtggattatcctctggtttgatcgaactggcactgtgcctattgctgccaaaaattcctccccagaagagagtgtctgatgcatgcattagttat |
393 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
49122959 |
gaagggtggattatcctctggtttgatcaaactggcactgtgcctattgctgccaaaaattcctccccaga--agagtgtctgatgtatgcattagttat |
49123056 |
T |
|
| Q |
394 |
catgtttcacaccttgctctgacactctacttcaagttatgggaccctggtggacacttatgttatcctt |
463 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49123057 |
catgtttcacaccttgctctgtcactctacttcaagttatgggaccctggtggacacttatgttatcctt |
49123126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 49122748 - 49122858
Alignment:
| Q |
12 |
agcagcagagaaaaatgaggaaaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagacc |
111 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49122748 |
agcagaagagaaaaatgaggaaaaggcagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagacc |
49122847 |
T |
|
| Q |
112 |
aaagcagatct |
122 |
Q |
| |
|
|||| |||||| |
|
|
| T |
49122848 |
aaagtagatct |
49122858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 463
Target Start/End: Complemental strand, 23541376 - 23541346
Alignment:
| Q |
433 |
tgggaccctggtggacacttatgttatcctt |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
23541376 |
tgggaccctggtggacacttatgttatcctt |
23541346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 12 - 463
Target Start/End: Complemental strand, 18132582 - 18132131
Alignment:
| Q |
12 |
agcagcagagaaaaatgaggaaaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagacc |
111 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18132582 |
agcagaagagaaaaatgaggaaaaggtagagaacacagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagacc |
18132483 |
T |
|
| Q |
112 |
aaagcagatctgtgcaaatttcttggtatcgacagactcttttatgaacatggtatgggtagtgtgtccgaatcgagggagaaattgcctagaaaaacta |
211 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||| || |||||||||||||||||||| |
|
|
| T |
18132482 |
aaagcagatcagcgcaaatttcttggtatcgacagacttttttatgaacatggtatgagtagtgtgttcgaatcgatggcgaaattgcctagaaaaacta |
18132383 |
T |
|
| Q |
212 |
tcggagagggatgggtttcactcgagttgggcggcctacctccaccaccgccaaagccgctagatccagatgtgtttgtggtgaagggtggattatcctc |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||| | ||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
18132382 |
tcggagagggatgggtttcactcgagttgggcggcttacctccacggctgccaaagccaccagatccagacgtgtttgtggtgaagggtggatgatcctt |
18132283 |
T |
|
| Q |
312 |
tggtttgatcgaactggcactgtgcctattgctgccaaaaattcctccccagaagagagtgtctgatgcatgcattagttatcatgtttcacaccttgct |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18132282 |
tggtttgatcgaactggcactgtgcctattgctgccaaaaattcctccccagaagagagtgtctgatgcatgcattagttatcatgtttcacaccttgct |
18132183 |
T |
|
| Q |
412 |
ctgacactctacttcaagttatgggaccctggtggacacttatgttatcctt |
463 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18132182 |
ctgtcactctacttcaagttatgggaccctggtggacacttattttatcctt |
18132131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 245
Target Start/End: Original strand, 11696 - 11929
Alignment:
| Q |
12 |
agcagcagagaaaaatgaggaaaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagacc |
111 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11696 |
agcagaagagaaaaatgaggaaaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagacc |
11795 |
T |
|
| Q |
112 |
aaagcagatctgtgcaaatttcttggtatcgacagactcttttatgaacatggtatgggtagtgtgtccgaatcgagggagaaattgcctagaaaaacta |
211 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
11796 |
aaagcagatctgcgcaaatttcttggtatcgacagactcttttatgaacatggtatgagtagtgtgttcgaatcgagggcaaaattgcctagaaaaacta |
11895 |
T |
|
| Q |
212 |
tcggagagggatgggtttcactcgagttgggcgg |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
11896 |
tcggagagggatgggtttcactcgagttgggcgg |
11929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 301 - 463
Target Start/End: Original strand, 11928 - 12089
Alignment:
| Q |
301 |
ggattatcctctggtttgatcgaactggcactgtgcctattgctgccaaaaattcctccccagaagagagtgtctgatgcatgcattagttatcatgttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11928 |
ggattatcctctggtttgatcgaactggcactgtgcctattgctgccaaaaattcctccccagaagagagtg-ctgatgcatgcattagttatcatgttt |
12026 |
T |
|
| Q |
401 |
cacaccttgctctgacactctacttcaagttatgggaccctggtggacacttatgttatcctt |
463 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12027 |
cacaccttgctctgtcactctacttcaagttatgggaccctggtggacacttatgttatcctt |
12089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1195 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold1195
Description:
Target: scaffold1195; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 614 - 680
Alignment:
| Q |
21 |
gaaaaatgaggaaaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatc |
87 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
614 |
gaaaaatgaggaaaaggtagagaatgcataagaaagggatgcagaaaattcctctgtgaatgtcatc |
680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 35389066 - 35389113
Alignment:
| Q |
416 |
cactctacttcaagttatgggaccctggtggacacttatgttatcctt |
463 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35389066 |
cactctacttcaagttatgggatcctggtggacacttatgttatcctt |
35389113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 463
Target Start/End: Complemental strand, 39984142 - 39984073
Alignment:
| Q |
394 |
catgtttcacaccttgctctgacactctacttcaagttatgggaccctggtggacacttatgttatcctt |
463 |
Q |
| |
|
|||| ||||||| ||||||| || | |||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
39984142 |
catgattcacacagtgctctgtcattatacttcaagttatgggacccaggtggacacttatgatatcctt |
39984073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 463
Target Start/End: Original strand, 14685368 - 14685437
Alignment:
| Q |
394 |
catgtttcacaccttgctctgacactctacttcaagttatgggaccctggtggacacttatgttatcctt |
463 |
Q |
| |
|
|||| ||||||| ||||||| || | |||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
14685368 |
catgattcacacagtgctctgtcattatacttcaagttatgggacccaggtggacacttatgatatcctt |
14685437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 463
Target Start/End: Original strand, 40422192 - 40422261
Alignment:
| Q |
394 |
catgtttcacaccttgctctgacactctacttcaagttatgggaccctggtggacacttatgttatcctt |
463 |
Q |
| |
|
|||| ||||||| ||||||| || | |||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
40422192 |
catgattcacacagtgctctgtcattatacttcaagttatgggacccaggtggacacttatgatatcctt |
40422261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 454
Target Start/End: Original strand, 21307224 - 21307284
Alignment:
| Q |
394 |
catgtttcacaccttgctctgacactctacttcaagttatgggaccctggtggacacttat |
454 |
Q |
| |
|
|||| ||||||| ||||||| || | |||||||||||||||||||| ||||||||||||| |
|
|
| T |
21307224 |
catgattcacacagtgctctgtcattatacttcaagttatgggacccaggtggacacttat |
21307284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 461
Target Start/End: Complemental strand, 54641318 - 54641278
Alignment:
| Q |
421 |
tacttcaagttatgggaccctggtggacacttatgttatcc |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
54641318 |
tacttcaagttatgggaccctggtggacacttctgttatcc |
54641278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 459
Target Start/End: Complemental strand, 54641658 - 54641620
Alignment:
| Q |
421 |
tacttcaagttatgggaccctggtggacacttatgttat |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
54641658 |
tacttcaagttatgggaccctggtggacacttttgttat |
54641620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 463
Target Start/End: Complemental strand, 54938167 - 54938099
Alignment:
| Q |
394 |
catgtttcacaccttgctctgacactctacttcaagttatgggaccctggtggacacttatgttatcctt |
463 |
Q |
| |
|
|||| ||||||| | |||||| || | ||||||| |||||||||||| |||||||||||||| ||||||| |
|
|
| T |
54938167 |
catgattcacacatcgctctgtcattatacttca-gttatgggacccaggtggacacttatgatatcctt |
54938099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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