View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16949_low_3 (Length: 332)
Name: NF16949_low_3
Description: NF16949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16949_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 322
Target Start/End: Original strand, 34166841 - 34167152
Alignment:
| Q |
11 |
cagagaatgcaagagtctggaacttttagctctacactgggagagtatgtccaacttatgaatttttagctaattaaactttccaatgacgtaatttatt |
110 |
Q |
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| T |
34166841 |
cagagaatgcaagagtctggaacttttagctctacactgggagagtatgtccaacttatgaatttttagctaattaaactttccaatgacgtaatttatt |
34166940 |
T |
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| Q |
111 |
tcttgagtgaaattagaaggttgtcgtgatcctactagagaaatggactnnnnnnnngcttataaagggtagacaatcctcagcatttaagccagtttgt |
210 |
Q |
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| T |
34166941 |
tcttgagtgaaattagaaggttgtcgtgatcctactagagaaatggactaaaaaaaagcttataaagggtagacaatcctcagcatttaagccagtttgt |
34167040 |
T |
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| Q |
211 |
cggggacgacttagactcaaacctaggatgatattataacctgataaatgtgnnnnnnnnacccatcagtaaaggtacaaactaaaatgttgcgtcctag |
310 |
Q |
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| T |
34167041 |
cggggacgacttagactcaaacctaggatgatattataacctgataaatgtgttttttttacccatcagtaaaggtacaaactaaaatgttgcgtcctag |
34167140 |
T |
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| Q |
311 |
gcatgatgatgt |
322 |
Q |
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|||||||||||| |
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| T |
34167141 |
gcatgatgatgt |
34167152 |
T |
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