View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16949_low_4 (Length: 298)
Name: NF16949_low_4
Description: NF16949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16949_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 50 - 247
Target Start/End: Original strand, 8590875 - 8591072
Alignment:
| Q |
50 |
aaatgtctaataatgataccaataaccctctatttaaaacatgacataactttttcactccaaataaattagaactatcatgtttctagaataaaaactg |
149 |
Q |
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| T |
8590875 |
aaatgtctaataatgataccaataaccctctatttaaaacttgacataactttttcactccaaataaattagaactatcatgtttctagaataaaaactg |
8590974 |
T |
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| Q |
150 |
tagattatcatccaatgaaagcttccaattctttaacaacttggtcagcagcatagattatcatcttttttaactgttccataaaaaagtatcacaat |
247 |
Q |
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| T |
8590975 |
tagattatcatccaatgaaagcttccaattcttcaacaacttggtcagcagcatagattatcatattttttaactgttccataaaaaagtatcacaat |
8591072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 8592154 - 8592203
Alignment:
| Q |
239 |
tatcacaatgaagttttgtaacagaatctcctctgccaagctcttctctg |
288 |
Q |
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| T |
8592154 |
tatcacaatgaagttttgtaacagaatctcctctgccaagctcttctctg |
8592203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 8720007 - 8720056
Alignment:
| Q |
239 |
tatcacaatgaagttttgtaacagaatctcctctgccaagctcttctctg |
288 |
Q |
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| T |
8720007 |
tatcacaatgaagttttgtaacagaatctcctctgccaagctcttctctg |
8720056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 8718850 - 8718926
Alignment:
| Q |
158 |
catccaatgaaagcttccaattctttaacaacttggtcagcagcatagattatcatcttttttaactgttccataaa |
234 |
Q |
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| T |
8718850 |
catctaatgaaagcttccaagtcttgaacaacttggtcaacagcatggattatcatcttttttacctgtttcataaa |
8718926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 278
Target Start/End: Original strand, 8674964 - 8675003
Alignment:
| Q |
239 |
tatcacaatgaagttttgtaacagaatctcctctgccaag |
278 |
Q |
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| T |
8674964 |
tatcacaatggagttttgtaacagaatctcctctgccaag |
8675003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 8672425 - 8672458
Alignment:
| Q |
100 |
tttttcactccaaataaattagaactatcatgtt |
133 |
Q |
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| T |
8672425 |
tttttcactccaaataaattagaactatcatgtt |
8672458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 8718737 - 8718770
Alignment:
| Q |
100 |
tttttcactccaaataaattagaactatcatgtt |
133 |
Q |
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| T |
8718737 |
tttttcactccaaataaattagaactatcatgtt |
8718770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 8672545 - 8672602
Alignment:
| Q |
163 |
aatgaaagcttccaattctttaacaacttggtcagcagcatagattatcatctttttt |
220 |
Q |
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| T |
8672545 |
aatgaaagcttccaaatcttgaacaactagatcaacaacatggattatcatctttttt |
8672602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 158 - 247
Target Start/End: Complemental strand, 23440064 - 23439975
Alignment:
| Q |
158 |
catccaatgaaagcttccaattctttaacaacttggtcagcagcatagattatcatcttttttaactgttccataaaaaagtatcacaat |
247 |
Q |
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| T |
23440064 |
catctaatgaaagcttcaaaatcttgaacaacttggtcaacaacatggattatcatcttttttacctgtttcaagaaaaaatatcacaat |
23439975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 23437533 - 23437491
Alignment:
| Q |
239 |
tatcacaatgaagttttgtaacagaatctcctctgccaagctc |
281 |
Q |
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| T |
23437533 |
tatcacaatggagttttgtaacagaatctcctctgccaagctc |
23437491 |
T |
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