View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16949_low_5 (Length: 275)

Name: NF16949_low_5
Description: NF16949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16949_low_5
NF16949_low_5
[»] chr3 (1 HSPs)
chr3 (1-275)||(45388348-45388621)
[»] chr7 (1 HSPs)
chr7 (244-275)||(48154510-48154541)
[»] chr8 (1 HSPs)
chr8 (245-275)||(40713886-40713916)
[»] chr6 (1 HSPs)
chr6 (237-275)||(20977765-20977803)
[»] scaffold0562 (1 HSPs)
scaffold0562 (246-275)||(3729-3758)
[»] chr4 (1 HSPs)
chr4 (246-275)||(3872910-3872939)
[»] chr2 (2 HSPs)
chr2 (246-275)||(29134046-29134075)
chr2 (247-275)||(27277542-27277570)
[»] chr1 (4 HSPs)
chr1 (246-275)||(17935198-17935227)
chr1 (246-275)||(28868000-28868029)
chr1 (247-275)||(22888225-22888253)
chr1 (247-275)||(32266985-32267013)


Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 45388348 - 45388621
Alignment:
Q  1 gtacaagtaatgttttttgatatatgataaaggtgaatgatgtcataacacccgaacaacagcgagttggagttaccacccgatagattcagggattatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45388348 gtacaagtaatgttttttgatatatgataaaggtgaatgatgtcataacacccgaacaacagcgagttggagttaccacccgatagattcagggattatg 45388447  T
Q  101 aaccgagaaagatatgacgtttttaaggggcacaagaacaattaaaatggccaatataacaattttctgcgtatgataacatggtcagtccaatatattt 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45388448 aaccgagagagatatgacgtttttaaggggcacaagaacaattaaaatggccaatataacaattttctgcgtatgataacatggtcagtccaatatattt 45388547  T
Q  201 taacagtatgagatatctttagactacatatgaagtatttagtttataaaatttagggttaaatatgtttttggt 275  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  45388548 taacagtatgagatat-tttagactacatatgaagtatttagtttataaaatctaaggttaaatatgtttttggt 45388621  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 244 - 275
Target Start/End: Complemental strand, 48154541 - 48154510
Alignment:
Q  244 ttataaaatttagggttaaatatgtttttggt 275  Q
    ||||||||||||||||||||||||||||||||    
T  48154541 ttataaaatttagggttaaatatgtttttggt 48154510  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 245 - 275
Target Start/End: Original strand, 40713886 - 40713916
Alignment:
Q  245 tataaaatttagggttaaatatgtttttggt 275  Q
    |||||||||||||||||||||||||||||||    
T  40713886 tataaaatttagggttaaatatgtttttggt 40713916  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 275
Target Start/End: Complemental strand, 20977803 - 20977765
Alignment:
Q  237 atttagtttataaaatttagggttaaatatgtttttggt 275  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  20977803 atttactttataaattttagggttaaatatgtttttggt 20977765  T

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Target: scaffold0562 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 246 - 275
Target Start/End: Original strand, 3729 - 3758
Alignment:
Q  246 ataaaatttagggttaaatatgtttttggt 275  Q
    ||||||||||||||||||||||||||||||    
T  3729 ataaaatttagggttaaatatgtttttggt 3758  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 246 - 275
Target Start/End: Original strand, 3872910 - 3872939
Alignment:
Q  246 ataaaatttagggttaaatatgtttttggt 275  Q
    ||||||||||||||||||||||||||||||    
T  3872910 ataaaatttagggttaaatatgtttttggt 3872939  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 246 - 275
Target Start/End: Original strand, 29134046 - 29134075
Alignment:
Q  246 ataaaatttagggttaaatatgtttttggt 275  Q
    ||||||||||||||||||||||||||||||    
T  29134046 ataaaatttagggttaaatatgtttttggt 29134075  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 275
Target Start/End: Original strand, 27277542 - 27277570
Alignment:
Q  247 taaaatttagggttaaatatgtttttggt 275  Q
    |||||||||||||||||||||||||||||    
T  27277542 taaaatttagggttaaatatgtttttggt 27277570  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 246 - 275
Target Start/End: Complemental strand, 17935227 - 17935198
Alignment:
Q  246 ataaaatttagggttaaatatgtttttggt 275  Q
    ||||||||||||||||||||||||||||||    
T  17935227 ataaaatttagggttaaatatgtttttggt 17935198  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 246 - 275
Target Start/End: Original strand, 28868000 - 28868029
Alignment:
Q  246 ataaaatttagggttaaatatgtttttggt 275  Q
    ||||||||||||||||||||||||||||||    
T  28868000 ataaaatttagggttaaatatgtttttggt 28868029  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 275
Target Start/End: Complemental strand, 22888253 - 22888225
Alignment:
Q  247 taaaatttagggttaaatatgtttttggt 275  Q
    |||||||||||||||||||||||||||||    
T  22888253 taaaatttagggttaaatatgtttttggt 22888225  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 275
Target Start/End: Complemental strand, 32267013 - 32266985
Alignment:
Q  247 taaaatttagggttaaatatgtttttggt 275  Q
    |||||||||||||||||||||||||||||    
T  32267013 taaaatttagggttaaatatgtttttggt 32266985  T

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