View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1694_high_1 (Length: 516)
Name: NF1694_high_1
Description: NF1694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1694_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 150 - 512
Target Start/End: Complemental strand, 11545345 - 11544982
Alignment:
| Q |
150 |
aaattctagggtttaagagttgtcatcattttatatatacaattgaagcataaattttaaa-gaaatggtaaataccttaataactgaaatgcaattgcc |
248 |
Q |
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||||||||||| || |||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| |
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| T |
11545345 |
aaattctagggcataggagttgtcataattttatatacacaattgaagcataaattttaaaagaaatggtaaataccttgataattgaaatgcaattgcc |
11545246 |
T |
|
| Q |
249 |
atgataaggtccatttgaaatgtgtgcgatttcatgcattggatttccacaagaaagaccatcccactaaaagaaaattattaacaagtaaccattaaca |
348 |
Q |
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| T |
11545245 |
atgataaggtccatttgaaatgtgtgcaatttcatgcattggatttccacaagaaagaccatcccactaaaagaaaattattaacaagtaaccattaaca |
11545146 |
T |
|
| Q |
349 |
attatgtgaactcaaaatcaaactatcaattaaattagagtcattcaaagaaaattatagagtaaacaatcatttggtctctaaatgtatcaaaactata |
448 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11545145 |
attatgtgaactcaaaatcaaactatcaattaaattagagtcattcaaataaaattatagagtaaacaatcatttggtctctaaatgtatcaaaactata |
11545046 |
T |
|
| Q |
449 |
gaagcatgcatcttttatctgaaaattttgaaaaatgaaacacacattcaaagaataatctacc |
512 |
Q |
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| T |
11545045 |
gaagcatgcatcttttatctgaaaattttgtaaaatgaaacacacattcaaagaagaaactacc |
11544982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 3 - 427
Target Start/End: Complemental strand, 11558968 - 11558529
Alignment:
| Q |
3 |
caattgaagcatatatcacatatgaccccacagatgatgtgaaactttcttgtagaatcaccatttgcctttgagtagggatgaatggctggtccacatg |
102 |
Q |
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| T |
11558968 |
caattggagcatatataacatatgaccccacggatgatgtgaaactttcttgtagaatcaccatttgcctctgagtagggatgaatgactggtccatatg |
11558869 |
T |
|
| Q |
103 |
nnnnnnn-------------taatta--tataagtaattggatgttgtatactataccgaataaattctagggtttaagagttgtcatcattttatatat |
187 |
Q |
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| T |
11558868 |
aaaaaaaattggaatcaatataattaattataagtgattggatgttatatactataccgaataaactctagggtttaagagttgtcatcattttatatac |
11558769 |
T |
|
| Q |
188 |
acaattgaagcataaattttaaagaaatggtaaataccttaataactgaaatgcaattgccatgataaggtccatttgaaatgtgtgcgatttcatgcat |
287 |
Q |
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| T |
11558768 |
acaattgaagcataaattttaaagaaatggtaaataccttaataactgaaatgcagttgccatgatagggtccatttgaaatgtgtgcaatttcatgcat |
11558669 |
T |
|
| Q |
288 |
tggatttccacaagaaagaccatcccactaaaagaaaattattaacaagtaa-ccattaacaattatgtgaactcaaaatcaaactatcaattaaattag |
386 |
Q |
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||||||||||||||||||||||| |||||| || |||||||||||||||||| || |||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
11558668 |
tggatttccacaagaaagaccattccactataacaaaattattaacaagtaacccgttaataattatgtgaactcaaaattaaactatcaattaaattag |
11558569 |
T |
|
| Q |
387 |
agtcattcaaagaaaattatagagtaaacaatcatttggtc |
427 |
Q |
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| T |
11558568 |
agtcattcaaa-taaattatatagtaaataattattgggtc |
11558529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 38 - 154
Target Start/End: Complemental strand, 11545488 - 11545372
Alignment:
| Q |
38 |
gatgtgaaactttcttgtagaatcaccatttgcctttgagtagggatgaatggctggtccacatgnnnnnnntaattatataagtaattggatgttgtat |
137 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11545488 |
gatgtgaaactttcttgtagaatcatcatttgcctttgagtagggatgaatggctggtccacatgaaaaaaataattatataagtaattggatgttgtat |
11545389 |
T |
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| Q |
138 |
actataccgaataaatt |
154 |
Q |
| |
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||||||||||||||||| |
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| T |
11545388 |
actataccgaataaatt |
11545372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 225 - 316
Target Start/End: Original strand, 12064103 - 12064194
Alignment:
| Q |
225 |
cttaataactgaaatgcaattgccatgataaggtccatttgaaatgtgtgcgatttcatgcattggatttccacaagaaagaccatcccact |
316 |
Q |
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| T |
12064103 |
cttaataattgaaatgcagtttccatgatagggtccatttgaaatgtgtgcgatttcatgcattggatttccacaagaaagaccatcccact |
12064194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 12064015 - 12064101
Alignment:
| Q |
3 |
caattgaagcatatatcacatatgaccccacagatgatgtgaaactttcttgtagaatcaccatttgcctttgagtagggatgaatg |
89 |
Q |
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| T |
12064015 |
caattggagcatatataatatatgaccccaccggagatgtgaaactttcctgcagaataaccatttgcctctgagtagggatgaatg |
12064101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 20916293 - 20916225
Alignment:
| Q |
3 |
caattgaagcatatatcacatatgaccccacagatgatgtgaaactttcttgtagaatcaccatttgcc |
71 |
Q |
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|||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||| |||||||| |
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| T |
20916293 |
caattgaagcatatataacatatgatcccacatgagatgtgaaactttcttgtagaatcatcatttgcc |
20916225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 20915807 - 20915875
Alignment:
| Q |
3 |
caattgaagcatatatcacatatgaccccacagatgatgtgaaactttcttgtagaatcaccatttgcc |
71 |
Q |
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|||||| ||||||||| |||||||| ||| | |||||||||||||| ||||||||||||||||||| |
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| T |
20915807 |
caattggagcatatataacatatgattccatatgagatgtgaaactttcctgtagaatcaccatttgcc |
20915875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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