View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1694_high_2 (Length: 338)
Name: NF1694_high_2
Description: NF1694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1694_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 51524656 - 51524983
Alignment:
| Q |
1 |
ctcgcaaccaacaaggatcgatttccctcgtggatcagagatgaggacgcaaagttgttgcaggaaaatggtgtgacggctgatgctgttgtggctgctg |
100 |
Q |
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| T |
51524656 |
ctcgcaaccaacaaggatcgatttccttcgtggatcagagatgaggacacaaagttgttgcaggcaaatggtgtgacggctgatgctgttgtggctgctg |
51524755 |
T |
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| Q |
101 |
atggaagtggagactacactaaggtgatggatgccgtatcggcagcacctgaaagcagcatgaaaggatatgtaatatatgtgaaaaaaggtgtttatgt |
200 |
Q |
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| T |
51524756 |
atggaagtggagactacgctaaggtgatggatgccgtatcggcagcacctgaaagcagcatgaaaagatatgtaatatatgtgaaaaaaggtgtttatgt |
51524855 |
T |
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| Q |
201 |
tgaaaatgttgagattaagaagaagaagtggaatatcatgttgattggtgaaggtatggatgctactattatctccggcagtcggaattatgtggacggt |
300 |
Q |
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| T |
51524856 |
tgaaaatgttgagattaagaagaagaaatggaatatcatgttgattggtgaaggcatggatgctactatcatctccggcagtcggaattatgtggacggt |
51524955 |
T |
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| Q |
301 |
tcgacaactttccggtcagctacctttg |
328 |
Q |
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| T |
51524956 |
tcgacaactttccggtcagctacctttg |
51524983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 79 - 328
Target Start/End: Original strand, 51530930 - 51531179
Alignment:
| Q |
79 |
gctgatgctgttgtggctgctgatggaagtggagactacactaaggtgatggatgccgtatcggcagcacctgaaagcagcatgaaaggatatgtaatat |
178 |
Q |
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| T |
51530930 |
gctgatgctattgtggcggctgatgggagtgggaactacactacagtgatggatgccgtattggcagcacctaaattcagcatgagaagatatgttatat |
51531029 |
T |
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| Q |
179 |
atgtgaaaaaaggtgtttatgttgaaaatgttgagattaagaagaagaagtggaatatcatgttgattggtgaaggtatggatgctactattatctccgg |
278 |
Q |
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| T |
51531030 |
atgtgaaaaaaggtgtatatgttgagaatgttgagattgataggaagaaatggaatattatgatgattggtgaaggtatggatgctactattatctccgg |
51531129 |
T |
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| Q |
279 |
cagtcggaattatgtggacggttcgacaactttccggtcagctacctttg |
328 |
Q |
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| T |
51531130 |
tagtcggaatcgtgtggatggttggactactttccgatcagctacctttg |
51531179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 273
Target Start/End: Complemental strand, 19512328 - 19512212
Alignment:
| Q |
157 |
agcatgaaaggatatgtaatatatgtgaaaaaaggtgtttatgttgaaaatgttgagattaagaagaagaagtggaatatcatgttgattggtgaaggta |
256 |
Q |
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||||||||| ||||||| ||||| || || | |||||||||| ||||||||||||| || ||||||||||| |||||| ||||| || | || || |||| |
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| T |
19512328 |
agcatgaaacgatatgtgatatacgtaaagagaggtgtttatattgaaaatgttgaaatcaagaagaagaaatggaatctcatgatggtcggagatggta |
19512229 |
T |
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| Q |
257 |
tggatgctactattatc |
273 |
Q |
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|| |||| || |||||| |
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| T |
19512228 |
tgaatgccacaattatc |
19512212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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