View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1694_high_5 (Length: 228)
Name: NF1694_high_5
Description: NF1694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1694_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 26 - 224
Target Start/End: Complemental strand, 3527635 - 3527437
Alignment:
| Q |
26 |
ttttttcacgtaggaaaagtggaacaaaattaaggtctcgttgtctcattaattataacaaaatgaatagtggcaaaatgtgtacacgggtgatgctgat |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3527635 |
ttttttcacgtaggaaaagtggaacaaaattaaggtctcgttgtctcattaattataacaaaatgaataatggcaaaatgtgtacacgggtgatgctgat |
3527536 |
T |
|
| Q |
126 |
ttgggtgttaatggtagtaattagcatgagtgtaatcagcttagtagatgcacaagtgcttccaccttgtgctgatcagatactattaccatgcattga |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3527535 |
ttgggtgttaatggtagtaattagcatgagtgtaattagcttagtagatgcacaagtgcttccaccttgtgctgatcagatactattaccatgcattga |
3527437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 3537114 - 3537055
Alignment:
| Q |
140 |
tagtaattagcatgagtgtaatcagcttagtagatgcacaagtgcttccaccttgtgctg |
199 |
Q |
| |
|
||||||||| ||| | |||||| ||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
3537114 |
tagtaattaacataaatgtaattagcatagtagatgcacaaatgcttccaccttgtgctg |
3537055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 3532016 - 3531963
Alignment:
| Q |
36 |
taggaaaagtggaacaaaattaaggtctcgttgtctcattaattataacaaaatg |
90 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||| ||||| ||||||||| |
|
|
| T |
3532016 |
taggaaaagtggaacaaaattaaggtc-cgtagtctcatgaattacaacaaaatg |
3531963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 3531929 - 3531880
Alignment:
| Q |
142 |
gtaattagcatgagtgtaatcagcttagtagatgcacaagtgcttccacc |
191 |
Q |
| |
|
||||||||||||||||| || ||| || ||||||||||||| |||||||| |
|
|
| T |
3531929 |
gtaattagcatgagtgtgattagcatattagatgcacaagttcttccacc |
3531880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University