View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1694_low_3 (Length: 277)

Name: NF1694_low_3
Description: NF1694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1694_low_3
NF1694_low_3
[»] chr6 (25 HSPs)
chr6 (136-267)||(19162217-19162348)
chr6 (1-118)||(19162741-19162858)
chr6 (1-49)||(33549131-33549179)
chr6 (6-49)||(31622997-31623040)
chr6 (1-49)||(10338175-10338223)
chr6 (3-46)||(23910114-23910157)
chr6 (1-47)||(20213070-20213116)
chr6 (1-47)||(22107093-22107139)
chr6 (1-46)||(12234508-12234553)
chr6 (1-49)||(12188304-12188352)
chr6 (1-49)||(14557989-14558037)
chr6 (1-45)||(16405116-16405160)
chr6 (1-49)||(21418497-21418545)
chr6 (1-37)||(30127439-30127475)
chr6 (6-37)||(13661559-13661590)
chr6 (1-48)||(14199948-14199995)
chr6 (1-46)||(3172769-3172814)
chr6 (1-46)||(6385892-6385937)
chr6 (1-46)||(11423596-11423641)
chr6 (1-46)||(24641191-24641236)
chr6 (1-45)||(12216775-12216819)
chr6 (1-37)||(13227159-13227195)
chr6 (9-49)||(20863402-20863442)
chr6 (5-49)||(24334030-24334074)
chr6 (1-49)||(34786455-34786503)
[»] scaffold0258 (1 HSPs)
scaffold0258 (1-49)||(15324-15372)
[»] chr8 (40 HSPs)
chr8 (1-49)||(968389-968437)
chr8 (1-49)||(16852367-16852415)
chr8 (1-49)||(29858050-29858098)
chr8 (1-48)||(11819804-11819851)
chr8 (1-48)||(27750758-27750805)
chr8 (1-49)||(3624607-3624655)
chr8 (1-49)||(19703488-19703536)
chr8 (1-49)||(29431038-29431086)
chr8 (1-49)||(44780115-44780163)
chr8 (8-49)||(2203519-2203560)
chr8 (5-46)||(23361654-23361695)
chr8 (5-49)||(6536547-6536591)
chr8 (1-33)||(11928732-11928764)
chr8 (1-49)||(12281521-12281569)
chr8 (1-49)||(18540325-18540373)
chr8 (5-49)||(26688892-26688936)
chr8 (1-49)||(28783087-28783135)
chr8 (1-49)||(33017241-33017289)
chr8 (2-46)||(35583629-35583673)
chr8 (1-37)||(35641902-35641938)
chr8 (1-38)||(3721158-3721195)
chr8 (1-46)||(22193365-22193410)
chr8 (4-49)||(23874386-23874431)
chr8 (5-49)||(3524406-3524450)
chr8 (9-49)||(4436002-4436042)
chr8 (9-49)||(5264571-5264611)
chr8 (1-49)||(6436556-6436604)
chr8 (1-49)||(7140736-7140784)
chr8 (57-85)||(8059632-8059660)
chr8 (1-49)||(8794346-8794394)
chr8 (1-37)||(11492074-11492110)
chr8 (1-45)||(13129699-13129743)
chr8 (1-49)||(15948050-15948098)
chr8 (1-29)||(18546363-18546391)
chr8 (5-49)||(30483889-30483933)
chr8 (1-49)||(31087259-31087307)
chr8 (1-33)||(33727874-33727906)
chr8 (1-49)||(35690065-35690113)
chr8 (1-37)||(36205234-36205270)
chr8 (53-85)||(43969042-43969074)
[»] chr7 (44 HSPs)
chr7 (1-49)||(20335832-20335880)
chr7 (1-49)||(5668572-5668620)
chr7 (1-49)||(26459411-26459459)
chr7 (1-46)||(22760893-22760938)
chr7 (1-49)||(2446335-2446383)
chr7 (1-49)||(43215211-43215259)
chr7 (1-49)||(43590934-43590982)
chr7 (1-49)||(48771965-48772013)
chr7 (1-47)||(42711987-42712033)
chr7 (1-47)||(45709709-45709755)
chr7 (1-46)||(8108611-8108656)
chr7 (1-46)||(23552148-23552193)
chr7 (1-49)||(7499925-7499973)
chr7 (1-49)||(15905675-15905722)
chr7 (1-49)||(17041013-17041061)
chr7 (1-49)||(22035425-22035473)
chr7 (1-37)||(25590650-25590686)
chr7 (5-49)||(26703152-26703196)
chr7 (1-49)||(29385744-29385792)
chr7 (1-49)||(30442515-30442563)
chr7 (1-49)||(37085550-37085598)
chr7 (1-49)||(39631871-39631919)
chr7 (6-49)||(5579240-5579283)
chr7 (1-36)||(7309396-7309431)
chr7 (3-46)||(7801210-7801253)
chr7 (1-48)||(9871287-9871334)
chr7 (5-47)||(27776201-27776243)
chr7 (11-49)||(28236592-28236630)
chr7 (1-35)||(31835233-31835267)
chr7 (1-46)||(3174957-3175002)
chr7 (54-83)||(21854550-21854579)
chr7 (1-46)||(23301603-23301648)
chr7 (1-34)||(29916809-29916842)
chr7 (53-85)||(2446308-2446340)
chr7 (1-49)||(5934148-5934196)
chr7 (1-37)||(9183192-9183228)
chr7 (1-49)||(11700192-11700240)
chr7 (1-37)||(18363735-18363771)
chr7 (53-85)||(30579335-30579367)
chr7 (1-49)||(30579362-30579410)
chr7 (1-49)||(33222397-33222445)
chr7 (1-49)||(38374600-38374648)
chr7 (53-85)||(41487362-41487394)
chr7 (1-49)||(48079670-48079718)
[»] chr3 (62 HSPs)
chr3 (1-49)||(10445140-10445188)
chr3 (1-49)||(36720408-36720456)
chr3 (1-49)||(44743856-44743904)
chr3 (1-49)||(2667889-2667937)
chr3 (1-49)||(21960578-21960626)
chr3 (1-49)||(27259188-27259236)
chr3 (1-49)||(51903879-51903927)
chr3 (1-48)||(8075128-8075175)
chr3 (1-48)||(30311334-30311381)
chr3 (1-35)||(47454618-47454652)
chr3 (1-46)||(4844512-4844557)
chr3 (1-46)||(4870208-4870253)
chr3 (2-47)||(8853801-8853846)
chr3 (1-38)||(33899652-33899689)
chr3 (1-49)||(14339637-14339685)
chr3 (1-49)||(27093362-27093410)
chr3 (1-49)||(27923044-27923092)
chr3 (1-49)||(30510200-30510248)
chr3 (1-49)||(31520606-31520654)
chr3 (1-49)||(32651439-32651487)
chr3 (1-37)||(45229273-45229309)
chr3 (1-45)||(45308903-45308947)
chr3 (1-37)||(52769984-52770020)
chr3 (1-49)||(54990729-54990777)
chr3 (2-49)||(9557347-9557394)
chr3 (1-48)||(15048062-15048109)
chr3 (1-35)||(14186688-14186722)
chr3 (1-47)||(28703405-28703451)
chr3 (1-35)||(37788466-37788500)
chr3 (1-46)||(12761542-12761587)
chr3 (1-46)||(30715772-30715817)
chr3 (1-38)||(33861735-33861772)
chr3 (1-46)||(39253727-39253772)
chr3 (3-35)||(2597223-2597255)
chr3 (1-37)||(3427554-3427590)
chr3 (1-49)||(4222168-4222216)
chr3 (53-85)||(8051214-8051246)
chr3 (1-49)||(8051241-8051289)
chr3 (1-37)||(8170711-8170747)
chr3 (1-49)||(10499110-10499158)
chr3 (53-85)||(10499153-10499185)
chr3 (1-49)||(11090166-11090214)
chr3 (2-46)||(11612329-11612373)
chr3 (1-49)||(16354893-16354941)
chr3 (1-49)||(16900682-16900730)
chr3 (53-93)||(16991534-16991574)
chr3 (1-37)||(17108899-17108935)
chr3 (5-49)||(17554798-17554842)
chr3 (1-37)||(17765166-17765202)
chr3 (1-37)||(19066486-19066522)
chr3 (1-49)||(19716224-19716272)
chr3 (1-45)||(20501727-20501771)
chr3 (53-85)||(24459990-24460022)
chr3 (1-49)||(25035732-25035780)
chr3 (9-37)||(31608533-31608561)
chr3 (1-49)||(31788971-31789019)
chr3 (1-37)||(35111219-35111255)
chr3 (1-49)||(46518655-46518703)
chr3 (1-37)||(49397542-49397578)
chr3 (5-37)||(49452912-49452944)
chr3 (1-37)||(49494147-49494183)
chr3 (5-37)||(53412984-53413016)
[»] chr4 (41 HSPs)
chr4 (1-87)||(19238578-19238655)
chr4 (1-51)||(39509095-39509145)
chr4 (1-49)||(23377983-23378031)
chr4 (1-49)||(37109352-37109400)
chr4 (1-49)||(46295124-46295172)
chr4 (1-49)||(2622396-2622444)
chr4 (1-49)||(7949455-7949503)
chr4 (1-49)||(13015454-13015502)
chr4 (1-49)||(31759659-31759707)
chr4 (1-49)||(37274460-37274508)
chr4 (1-49)||(38869795-38869843)
chr4 (1-49)||(49576895-49576943)
chr4 (1-85)||(55427201-55427276)
chr4 (1-48)||(8030205-8030252)
chr4 (1-48)||(46329192-46329239)
chr4 (4-46)||(24827855-24827897)
chr4 (1-35)||(30938220-30938254)
chr4 (4-49)||(17618308-17618353)
chr4 (1-46)||(51954144-51954189)
chr4 (1-49)||(7292799-7292847)
chr4 (1-49)||(32992639-32992687)
chr4 (1-49)||(37720215-37720263)
chr4 (1-51)||(2185033-2185083)
chr4 (1-31)||(19229209-19229239)
chr4 (1-47)||(19680789-19680835)
chr4 (53-86)||(9241069-9241102)
chr4 (1-46)||(9936962-9937007)
chr4 (1-46)||(11592154-11592199)
chr4 (1-46)||(28635726-28635771)
chr4 (53-86)||(44865333-44865366)
chr4 (1-34)||(47044759-47044792)
chr4 (1-37)||(12798723-12798759)
chr4 (5-49)||(16581720-16581764)
chr4 (1-37)||(21660145-21660181)
chr4 (1-37)||(21668909-21668945)
chr4 (1-49)||(24234672-24234720)
chr4 (1-49)||(37980149-37980196)
chr4 (1-37)||(41346964-41347000)
chr4 (53-85)||(51250566-51250598)
chr4 (3-35)||(51622526-51622558)
chr4 (1-49)||(56409978-56410025)
[»] chr5 (33 HSPs)
chr5 (1-46)||(16773837-16773882)
chr5 (1-49)||(14285188-14285236)
chr5 (1-49)||(25627084-25627132)
chr5 (1-49)||(30109309-30109357)
chr5 (6-45)||(4793094-4793133)
chr5 (1-51)||(84849-84899)
chr5 (1-87)||(8278276-8278353)
chr5 (1-47)||(39327091-39327137)
chr5 (9-46)||(1410668-1410705)
chr5 (5-46)||(9842851-9842892)
chr5 (1-45)||(17028265-17028309)
chr5 (1-49)||(21589315-21589363)
chr5 (1-49)||(29075808-29075856)
chr5 (5-49)||(30883203-30883247)
chr5 (1-49)||(34984833-34984881)
chr5 (1-37)||(43442235-43442271)
chr5 (1-48)||(35982716-35982763)
chr5 (1-35)||(8779311-8779345)
chr5 (1-35)||(29173531-29173565)
chr5 (1-30)||(5390853-5390882)
chr5 (9-46)||(14495814-14495851)
chr5 (1-34)||(35360087-35360120)
chr5 (1-37)||(87424-87460)
chr5 (1-37)||(6844768-6844804)
chr5 (1-49)||(15485421-15485468)
chr5 (1-49)||(16436645-16436692)
chr5 (5-49)||(16457837-16457881)
chr5 (1-49)||(18596002-18596050)
chr5 (1-49)||(21549138-21549186)
chr5 (53-85)||(21589288-21589320)
chr5 (1-49)||(22737109-22737157)
chr5 (1-37)||(25979209-25979245)
chr5 (53-85)||(36497675-36497707)
[»] chr2 (43 HSPs)
chr2 (1-46)||(39715022-39715067)
chr2 (1-49)||(42327396-42327444)
chr2 (1-46)||(28846721-28846766)
chr2 (1-49)||(4262303-4262351)
chr2 (1-49)||(7799036-7799084)
chr2 (1-49)||(21213796-21213844)
chr2 (1-49)||(23052524-23052572)
chr2 (1-45)||(29503302-29503346)
chr2 (5-45)||(33839265-33839305)
chr2 (1-49)||(37480102-37480150)
chr2 (1-48)||(21195677-21195724)
chr2 (1-46)||(42860378-42860423)
chr2 (1-49)||(11251114-11251162)
chr2 (1-49)||(12086130-12086178)
chr2 (1-49)||(13803522-13803570)
chr2 (1-49)||(19016058-19016106)
chr2 (1-49)||(21939124-21939172)
chr2 (1-45)||(32687512-32687556)
chr2 (1-49)||(33569859-33569907)
chr2 (1-45)||(33582004-33582048)
chr2 (3-49)||(37755974-37756020)
chr2 (12-49)||(1729843-1729880)
chr2 (1-46)||(12994377-12994422)
chr2 (53-86)||(16525177-16525210)
chr2 (1-46)||(19244139-19244184)
chr2 (4-37)||(25637190-25637223)
chr2 (1-46)||(29197377-29197422)
chr2 (5-46)||(30907633-30907674)
chr2 (1-49)||(42922441-42922490)
chr2 (53-85)||(3697443-3697475)
chr2 (1-49)||(6099520-6099567)
chr2 (1-49)||(7667470-7667518)
chr2 (1-49)||(11062387-11062435)
chr2 (1-37)||(14500316-14500352)
chr2 (1-37)||(17737625-17737661)
chr2 (53-85)||(19016031-19016063)
chr2 (1-49)||(23140913-23140961)
chr2 (1-49)||(23552703-23552751)
chr2 (1-49)||(26482120-26482167)
chr2 (1-45)||(27244339-27244383)
chr2 (1-49)||(30410550-30410598)
chr2 (53-85)||(37480075-37480107)
chr2 (1-49)||(42602581-42602629)
[»] scaffold0299 (1 HSPs)
scaffold0299 (1-49)||(11555-11603)
[»] chr1 (47 HSPs)
chr1 (1-49)||(21547481-21547529)
chr1 (1-48)||(6122822-6122869)
chr1 (1-49)||(15786321-15786369)
chr1 (1-49)||(31383799-31383847)
chr1 (1-44)||(7219919-7219962)
chr1 (1-47)||(12370192-12370238)
chr1 (5-86)||(15064961-15065036)
chr1 (1-46)||(3265954-3265999)
chr1 (1-34)||(12587312-12587345)
chr1 (1-37)||(2799901-2799937)
chr1 (1-49)||(4566575-4566623)
chr1 (1-49)||(8177183-8177231)
chr1 (5-49)||(9165200-9165244)
chr1 (1-49)||(10526850-10526898)
chr1 (1-37)||(16893433-16893469)
chr1 (1-49)||(17745257-17745305)
chr1 (1-49)||(24047103-24047151)
chr1 (1-37)||(33700774-33700810)
chr1 (1-49)||(36371497-36371545)
chr1 (1-37)||(38947473-38947509)
chr1 (5-49)||(40257426-40257470)
chr1 (1-49)||(50901609-50901657)
chr1 (5-49)||(52116786-52116830)
chr1 (1-48)||(9117147-9117194)
chr1 (1-46)||(8904444-8904489)
chr1 (1-46)||(12259290-12259335)
chr1 (1-46)||(16169979-16170024)
chr1 (12-49)||(18459243-18459280)
chr1 (1-34)||(19528328-19528361)
chr1 (12-49)||(21268005-21268042)
chr1 (12-49)||(31794276-31794313)
chr1 (12-49)||(51013138-51013175)
chr1 (1-34)||(51814536-51814569)
chr1 (1-49)||(952538-952586)
chr1 (1-37)||(1247152-1247188)
chr1 (1-33)||(2220015-2220047)
chr1 (1-49)||(4824998-4825046)
chr1 (1-33)||(12662325-12662357)
chr1 (1-37)||(17439956-17439992)
chr1 (53-85)||(19528371-19528403)
chr1 (2-34)||(21392879-21392911)
chr1 (1-49)||(27476772-27476820)
chr1 (1-49)||(31605849-31605897)
chr1 (53-85)||(40257399-40257431)
chr1 (1-49)||(43445990-43446038)
chr1 (57-85)||(51814494-51814522)
chr1 (1-49)||(52336775-52336823)
[»] scaffold1367 (1 HSPs)
scaffold1367 (1-49)||(841-889)
[»] scaffold0291 (1 HSPs)
scaffold0291 (1-37)||(2471-2507)
[»] scaffold0194 (1 HSPs)
scaffold0194 (1-37)||(13047-13083)
[»] scaffold0180 (1 HSPs)
scaffold0180 (1-49)||(19963-20011)
[»] scaffold0126 (1 HSPs)
scaffold0126 (1-49)||(25348-25396)
[»] scaffold0002 (1 HSPs)
scaffold0002 (5-49)||(94976-95020)
[»] scaffold0122 (1 HSPs)
scaffold0122 (2-49)||(6921-6968)
[»] scaffold0417 (1 HSPs)
scaffold0417 (53-85)||(10219-10251)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-45)||(145914-145958)
[»] scaffold0008 (1 HSPs)
scaffold0008 (1-49)||(49333-49381)


Alignment Details
Target: chr6 (Bit Score: 104; Significance: 7e-52; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 136 - 267
Target Start/End: Complemental strand, 19162348 - 19162217
Alignment:
Q  136 ttttcacgcaagtaaaatatagaaaattactaaataagtatgaatttaattaatattaagatgatatgaaataaaatgcttacatgggagtctctaccca 235  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  19162348 ttttcactcaagtaaaatatagaaaattactaaataattatgaattgaattaacattaagatgatatgaaataaaatgcttacatgggagtctctaacca 19162249  T
Q  236 cagcgaaagcaggaatctcgacaatgcctttg 267  Q
    |||||||||||| ||||||||||| |||||||    
T  19162248 cagcgaaagcagaaatctcgacaacgcctttg 19162217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 19162858 - 19162741
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagccattgaagccaataccatcaggccaacccaagtgggttaagactatgatattc 100  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||| ||| ||||||||||| ||||||||||||||||||    
T  19162858 aatcgaacctgagatctcgaggaggagcacactcccgtgtcccaagccattgaagacaataccattagggcaacccaagtgagttaagactatgatattc 19162759  T
Q  101 taattaaggtaaggagca 118  Q
    ||||||||||||| ||||    
T  19162758 taattaaggtaagcagca 19162741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 33549179 - 33549131
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33549179 aatcgaacctgagacctcgaggaggagcacactcccaggtcccaagcca 33549131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 31622997 - 31623040
Alignment:
Q  6 aacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  31622997 aacctgagacctcgaggaggagcacactcccaggtcccaagcca 31623040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10338175 - 10338223
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| ||||||||||||||||| | |||||||||||    
T  10338175 aatcgaacctgagaccttgaggaggagcacactcctaggtcccaagcca 10338223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 23910114 - 23910157
Alignment:
Q  3 tcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||    
T  23910114 tcgaacctgagaccttgaggaggagcacactcccaggtcccaag 23910157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 20213116 - 20213070
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagc 47  Q
    ||||||||||||||| | ||||||||||||||||||| |||||||||    
T  20213116 aatcgaacctgagacattgaggaggagcacactcccaggtcccaagc 20213070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 22107139 - 22107093
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagc 47  Q
    ||||||||||||||| | ||||||||||||||||||| |||||||||    
T  22107139 aatcgaacctgagacattgaggaggagcacactcccaggtcccaagc 22107093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 12234508 - 12234553
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    |||||||||||||||||||||  |||||||||||||| ||||||||    
T  12234508 aatcgaacctgagacctcgagagggagcacactcccaggtcccaag 12234553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 12188304 - 12188352
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||| ||| |||| ||||||||||||||||||| |||||||||||    
T  12188304 aatcgaacttgaaaccttgaggaggagcacactcccaggtcccaagcca 12188352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14558037 - 14557989
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||  ||||||||||||||| ||| |||||||||||    
T  14558037 aatcgaacctgagacccggaggaggagcacacttccaggtcccaagcca 14557989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16405160 - 16405116
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaa 45  Q
    ||||||| |||||||||||||||| |||||||||||| |||||||    
T  16405160 aatcgaaactgagacctcgaggagaagcacactcccaggtcccaa 16405116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 21418545 - 21418497
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||| |||||| | ||||||||||||||||||| |||||||||||    
T  21418545 aatcgaacttgagacatggaggaggagcacactcccaagtcccaagcca 21418497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30127475 - 30127439
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    |||||||||||||||||||| ||||||||||||||||    
T  30127475 aatcgaacctgagacctcgaagaggagcacactccca 30127439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 37
Target Start/End: Complemental strand, 13661590 - 13661559
Alignment:
Q  6 aacctgagacctcgaggaggagcacactccca 37  Q
    ||||||||||||||||||||||||||||||||    
T  13661590 aacctgagacctcgaggaggagcacactccca 13661559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 14199948 - 14199995
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcc 48  Q
    ||||||| ||||||||| ||||||||||||||||||| ||| ||||||    
T  14199948 aatcgaatctgagaccttgaggaggagcacactcccaagtctcaagcc 14199995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 3172769 - 3172814
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    ||||||| |||||||||||| |||||||| ||||||| ||||||||    
T  3172769 aatcgaatctgagacctcgatgaggagcatactcccaggtcccaag 3172814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 6385937 - 6385892
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    |||||||||||||||||  |||||||||||| ||||| ||||||||    
T  6385937 aatcgaacctgagaccttaaggaggagcacagtcccaggtcccaag 6385892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 11423641 - 11423596
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    |||||||||||||||||||||||| |||| |||||||  |||||||    
T  11423641 aatcgaacctgagacctcgaggagaagcatactcccaaatcccaag 11423596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 24641191 - 24641236
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    |||||||||| | ||||||||||||||||||||||||  |||||||    
T  24641191 aatcgaaccttaaacctcgaggaggagcacactcccagatcccaag 24641236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 12216819 - 12216775
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaa 45  Q
    ||||||||||||||||||||| ||||||||| || || |||||||    
T  12216819 aatcgaacctgagacctcgagaaggagcacattcgcaggtcccaa 12216775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 13227159 - 13227195
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    |||||||| |||||| |||||||||||||||||||||    
T  13227159 aatcgaacttgagacttcgaggaggagcacactccca 13227195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 20863442 - 20863402
Alignment:
Q  9 ctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||| ||||||||||||||||| | |||||||||||    
T  20863442 ctgagaccttgaggaggagcacactccaaagtcccaagcca 20863402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 24334030 - 24334074
Alignment:
Q  5 gaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||| ||||||||||| ||| | |||||||||||||    
T  24334030 gaacctgagaccttgaggaggagcatactgcaatgtcccaagcca 24334074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34786455 - 34786503
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||| |||||| ||||| |||||||||||||||  ||||||||||    
T  34786455 aatcgaacttgagacttcgagaaggagcacactcccagatcccaagcca 34786503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15324 - 15372
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15324 aatcgaacctgagacctcgaggaggagcacactcccaggtcccaagcca 15372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 40)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 968437 - 968389
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  968437 aatcgaacctgagacctcgaggaggagcacactcccaggtcccaagcca 968389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 16852415 - 16852367
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16852415 aatcgaacctgagacctcgaggaggagcacactcccaggtcccaagcca 16852367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29858050 - 29858098
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||    
T  29858050 aatcgaacctgagacctcgaggaggagcacactccctggtcccaagcca 29858098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 11819851 - 11819804
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcc 48  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  11819851 aatcgaacctgagaccttgaggaggagcacactcccaagtcccaagcc 11819804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 27750805 - 27750758
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcc 48  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  27750805 aatcgaacctgagaccttgaggaggagcacactcccaagtcccaagcc 27750758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3624655 - 3624607
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| || |||||||||||||||| |||||||||||    
T  3624655 aatcgaacctgagaccttgaagaggagcacactcccaggtcccaagcca 3624607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 19703488 - 19703536
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| |||||||||||||||| || |||||||||||    
T  19703488 aatcgaacctgagaccttgaggaggagcacactctcaggtcccaagcca 19703536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29431086 - 29431038
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||| |||| |||||||||||||||||| |||||||||||    
T  29431086 aatcgaacctgaggcctcaaggaggagcacactcccaagtcccaagcca 29431038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 44780115 - 44780163
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||| |||||||||||| ||||||||||||||||||| |||||||||||    
T  44780115 aatcaaacctgagaccttgaggaggagcacactcccaagtcccaagcca 44780163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 2203560 - 2203519
Alignment:
Q  8 cctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||| ||||||||||||||||||| |||||||||||    
T  2203560 cctgagaccttgaggaggagcacactcccaggtcccaagcca 2203519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 23361654 - 23361695
Alignment:
Q  5 gaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    ||||||||||||| |||||||||||||||||||| |||||||    
T  23361654 gaacctgagaccttgaggaggagcacactcccatatcccaag 23361695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 6536591 - 6536547
Alignment:
Q  5 gaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||| ||||||||||||||||| | |||||||||||    
T  6536591 gaacctgagaccttgaggaggagcacactcctaggtcccaagcca 6536547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 11928732 - 11928764
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacact 33  Q
    |||||||||||||||||||||||||||||||||    
T  11928732 aatcgaacctgagacctcgaggaggagcacact 11928764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 12281569 - 12281521
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||| ||||||||||||||||| |||||||| || |||||||||||    
T  12281569 aatcgaatctgagacctcgaggaggggcacactctcaggtcccaagcca 12281521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 18540373 - 18540325
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| |||||| || ||||||||| |||||||||||    
T  18540373 aatcgaacctgagaccttgaggagaagtacactcccaggtcccaagcca 18540325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 26688936 - 26688892
Alignment:
Q  5 gaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||| ||||||||||||||||| | |||||||||||    
T  26688936 gaacctgagaccttgaggaggagcacactccaaggtcccaagcca 26688892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 28783135 - 28783087
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||| |||||||| ||||||||||||||||||| ||| |||||||    
T  28783135 aatcgaacatgagaccttgaggaggagcacactcccaggtctcaagcca 28783087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 33017289 - 33017241
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| ||||||||||||||| ||| || ||||||||    
T  33017289 aatcgaacctgagaccttgaggaggagcacacttccaggttccaagcca 33017241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 35583673 - 35583629
Alignment:
Q  2 atcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    ||||| |||||||||||||||||||||| ||||||| ||||||||    
T  35583673 atcgatcctgagacctcgaggaggagcaaactcccaagtcccaag 35583629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 35641902 - 35641938
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    ||||||||||||||| |||||||||||||||||||||    
T  35641902 aatcgaacctgagacatcgaggaggagcacactccca 35641938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 3721158 - 3721195
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccat 38  Q
    |||||||||||| || ||||||||||||||||||||||    
T  3721158 aatcgaacctgaaacatcgaggaggagcacactcccat 3721195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 22193365 - 22193410
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    |||||||||| |||||| ||||||||||||||||||| | ||||||    
T  22193365 aatcgaacctaagaccttgaggaggagcacactcccaggccccaag 22193410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 23874386 - 23874431
Alignment:
Q  4 cgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||||||||||||||| ||| | ||||| |||||||||||    
T  23874386 cgaacctgagacctcgaggaggcgcagattcccaggtcccaagcca 23874431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 3524406 - 3524450
Alignment:
Q  5 gaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||| |||||| ||||||||||||||||| | |||||||||||    
T  3524406 gaacctaagaccttgaggaggagcacactccaaggtcccaagcca 3524450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 4436042 - 4436002
Alignment:
Q  9 ctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||| |||||||||||| |||||||||| |||||||    
T  4436042 ctgagaccttgaggaggagcactctcccatgtctcaagcca 4436002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 5264611 - 5264571
Alignment:
Q  9 ctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||||||||| ||||| || ||||||||    
T  5264611 ctgagacctcgaggaggagcacattcccaggttccaagcca 5264571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6436556 - 6436604
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||| ||||||||| | ||||||||||||||| | |||||||||||    
T  6436556 aatcgaatctgagaccttgcggaggagcacactcctaagtcccaagcca 6436604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7140784 - 7140736
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||| |||||| ||||||||||||||||| ||||  ||||||||||    
T  7140784 aatcgaatctgagagctcgaggaggagcacacacccagatcccaagcca 7140736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 85
Target Start/End: Complemental strand, 8059660 - 8059632
Alignment:
Q  57 caataccatcaggccaacccaagtgggtt 85  Q
    |||||||||||||||||||||||||||||    
T  8059660 caataccatcaggccaacccaagtgggtt 8059632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 8794346 - 8794394
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||  ||||||||||||||| ||| || ||||||||    
T  8794346 aatcgaacctgagaccctgaggaggagcacacttccaggttccaagcca 8794394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11492074 - 11492110
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    |||||||||| |||||||||| |||||||||||||||    
T  11492074 aatcgaacctaagacctcgagaaggagcacactccca 11492110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13129743 - 13129699
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaa 45  Q
    |||||||||||| |||| |||||||||| |||||||| |||||||    
T  13129743 aatcgaacctgaaaccttgaggaggagcgcactcccaagtcccaa 13129699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15948050 - 15948098
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||  ||| ||||||||||||| ||||||| |||||||||||    
T  15948050 aatcgaacctatgacatcgaggaggagcatactcccaagtcccaagcca 15948098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 18546363 - 18546391
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagca 29  Q
    |||||||||||||||||||||||||||||    
T  18546363 aatcgaacctgagacctcgaggaggagca 18546391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 30483889 - 30483933
Alignment:
Q  5 gaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||||   |||||||||||||||||||| ||||||||||    
T  30483889 gaacctgagactctgaggaggagcacactcccatatcccaagcca 30483933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31087259 - 31087307
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||||||||||| | | |||||||  ||||||||||    
T  31087259 aatcgaacctgagacctcgaggagggggatactcccagatcccaagcca 31087307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 33727874 - 33727906
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacact 33  Q
    ||||||||||||||||| |||||||||||||||    
T  33727874 aatcgaacctgagaccttgaggaggagcacact 33727906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 35690065 - 35690113
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| ||||||||||| || ||||  ||||||||||    
T  35690065 aatcgaacctgagaccttgaggaggagcaaacacccagatcccaagcca 35690113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 36205270 - 36205234
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    |||||||| |||||||| |||||||||||||||||||    
T  36205270 aatcgaacatgagaccttgaggaggagcacactccca 36205234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 43969042 - 43969074
Alignment:
Q  53 aagccaataccatcaggccaacccaagtgggtt 85  Q
    ||||||||||||||| |||||||||||||||||    
T  43969042 aagccaataccatcatgccaacccaagtgggtt 43969074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 44)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 20335832 - 20335880
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20335832 aatcgaacctgagacctcgaggaggagcacactcccaagtcccaagcca 20335880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5668572 - 5668620
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||    
T  5668572 aatcgatcctgagacctcgaggaggagcacacttccatgtcccaagcca 5668620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 26459411 - 26459459
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  26459411 aatcgaacctgagaccttgaggaggagcacactcccaggtcccaagcca 26459459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 22760938 - 22760893
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||    
T  22760938 aatcgaacctgagaccttgaggaggagcacactcccaggtcccaag 22760893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2446383 - 2446335
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||| ||||| |||||||||||||||||||||| |||||||||||    
T  2446383 aatcgaacttgagatctcgaggaggagcacactcccaagtcccaagcca 2446335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 43215259 - 43215211
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| ||||||||||||||||| | |||||||||||    
T  43215259 aatcgaacctgagaccttgaggaggagcacactccgaggtcccaagcca 43215211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 43590982 - 43590934
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||| | ||||||||||||||||||| |||||||||||    
T  43590982 aatcgaacctgagacattgaggaggagcacactcccaagtcccaagcca 43590934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 48772013 - 48771965
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||||||||||| ||||||||||||||||||  ||||||||||    
T  48772013 aatcgaacctgagacctcaaggaggagcacactcccagatcccaagcca 48771965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 42712033 - 42711987
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagc 47  Q
    |||||||| |||||||| |||||||||||||||||||||| ||||||    
T  42712033 aatcgaacatgagaccttgaggaggagcacactcccatgtaccaagc 42711987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 45709709 - 45709755
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagc 47  Q
    |||||||||||||||||||||||||||||||||| ||  ||||||||    
T  45709709 aatcgaacctgagacctcgaggaggagcacactctcagatcccaagc 45709755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 8108656 - 8108611
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    |||||||||||||||||| ||||||||| ||||||||| |||||||    
T  8108656 aatcgaacctgagacctcaaggaggagcgcactcccatatcccaag 8108611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 23552193 - 23552148
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    |||||||| |||||||| ||||||||||||||||||| ||||||||    
T  23552193 aatcgaacttgagaccttgaggaggagcacactcccaggtcccaag 23552148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7499925 - 7499973
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||||||||||||| |||||||| |||| || |||||||||||    
T  7499925 aatcgaacctgagacctcgaagaggagcaaactctcaggtcccaagcca 7499973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15905675 - 15905722
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||||||||||  |||||||||||||||||| |||||||||||    
T  15905675 aatcgaacctgagaccta-aggaggagcacactcccaggtcccaagcca 15905722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 17041013 - 17041061
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| ||||||||||||||| |||  ||||||||||    
T  17041013 aatcgaacctgagaccttgaggaggagcacacttccagatcccaagcca 17041061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22035473 - 22035425
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||| | |||||||||||||||||||| || |||||||||||    
T  22035473 aatcgaacctgggtcctcgaggaggagcacactctcaggtcccaagcca 22035425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25590686 - 25590650
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    ||||||||| |||||||||||||||||||||||||||    
T  25590686 aatcgaacccgagacctcgaggaggagcacactccca 25590650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 26703196 - 26703152
Alignment:
Q  5 gaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| |||||||||||||||  ||||||||||    
T  26703196 gaacctgagacctcgagaaggagcacactcccagatcccaagcca 26703152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29385744 - 29385792
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||| |||||||||||| ||||||||||||||||| | |||||||||||    
T  29385744 aatcaaacctgagaccttgaggaggagcacactccaaagtcccaagcca 29385792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 30442563 - 30442515
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||| |||||| ||||||||||| ||||||| |||||||||||    
T  30442563 aatcgaacctcagaccttgaggaggagcaaactcccaggtcccaagcca 30442515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37085550 - 37085598
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||||| |||||||||| |||||||||||||  ||||||||||    
T  37085550 aatcgaacctgaaacctcgaggatgagcacactcccaaatcccaagcca 37085598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 39631919 - 39631871
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| ||||||||||  ||||||| |||||||||||    
T  39631919 aatcgaacctgagaccttgaggaggagcttactcccaggtcccaagcca 39631871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 5579240 - 5579283
Alignment:
Q  6 aacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||||| ||||||||||||||||| | |||||||||||    
T  5579240 aacctgagaccttgaggaggagcacactccaaggtcccaagcca 5579283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 7309431 - 7309396
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccc 36  Q
    |||||||| |||||||||||||||||||||||||||    
T  7309431 aatcgaacttgagacctcgaggaggagcacactccc 7309396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 7801253 - 7801210
Alignment:
Q  3 tcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    ||||||||||||||| || |||||||||||||||| ||||||||    
T  7801253 tcgaacctgagaccttgaagaggagcacactcccaggtcccaag 7801210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 9871287 - 9871334
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcc 48  Q
    ||||||| ||||||| |||||||||||||||||||||  |||||||||    
T  9871287 aatcgaatctgagacttcgaggaggagcacactcccaaatcccaagcc 9871334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 27776243 - 27776201
Alignment:
Q  5 gaacctgagacctcgaggaggagcacactcccatgtcccaagc 47  Q
    ||||||||||| |||||||||||||||||| || |||||||||    
T  27776243 gaacctgagacttcgaggaggagcacactctcaagtcccaagc 27776201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 28236592 - 28236630
Alignment:
Q  11 gagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  28236592 gagacctcgaggaggagcgcactcccaggtcccaagcca 28236630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 31835267 - 31835233
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcc 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  31835267 aatcgaacctgagaccttgaggaggagcacactcc 31835233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 3175002 - 3174957
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    |||||||||||||||||||||  ||||||||||||||  |||||||    
T  3175002 aatcgaacctgagacctcgagatggagcacactcccagatcccaag 3174957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 83
Target Start/End: Complemental strand, 21854579 - 21854550
Alignment:
Q  54 agccaataccatcaggccaacccaagtggg 83  Q
    ||||||||||||||||||||||||||||||    
T  21854579 agccaataccatcaggccaacccaagtggg 21854550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 23301603 - 23301648
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    |||| ||| ||||||||| |||||||||||||||||| ||||||||    
T  23301603 aatcaaacttgagacctcaaggaggagcacactcccaagtcccaag 23301648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 29916809 - 29916842
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactc 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  29916809 aatcgaacctgagaccttgaggaggagcacactc 29916842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 2446340 - 2446308
Alignment:
Q  53 aagccaataccatcaggccaacccaagtgggtt 85  Q
    |||||||||||||||| ||||||||||||||||    
T  2446340 aagccaataccatcagaccaacccaagtgggtt 2446308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 5934196 - 5934148
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||| ||| ||||| ||||||||||||||||||  ||||||||||    
T  5934196 aatcgaacatgaaacctcaaggaggagcacactcccagatcccaagcca 5934148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9183192 - 9183228
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    ||||||||||||||| | |||||||||||||||||||    
T  9183192 aatcgaacctgagactttgaggaggagcacactccca 9183228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11700240 - 11700192
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| ||||||||||| |||| || ||| |||||||    
T  11700240 aatcgaacctgagaccttgaggaggagcaaactctcaagtctcaagcca 11700192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 18363771 - 18363735
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    |||| |||||||||||| |||||||||||||||||||    
T  18363771 aatcaaacctgagaccttgaggaggagcacactccca 18363735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 30579367 - 30579335
Alignment:
Q  53 aagccaataccatcaggccaacccaagtgggtt 85  Q
    |||||||||||| ||||||||||||||||||||    
T  30579367 aagccaataccaccaggccaacccaagtgggtt 30579335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 30579410 - 30579362
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| ||||||| | ||||||||| ||| |||||||    
T  30579410 aatcgaacctgagaccttgaggaggtggacactcccaggtctcaagcca 30579362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 33222445 - 33222397
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| ||||| ||| ||||| ||| |||||||||||    
T  33222445 aatcgaacctgagaccttgaggatgagtacacttccaggtcccaagcca 33222397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 38374600 - 38374648
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||| |||||| ||||||||||||||||  | |||||||||||    
T  38374600 aatcgaacctaagaccttgaggaggagcacactctaaggtcccaagcca 38374648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 41487394 - 41487362
Alignment:
Q  53 aagccaataccatcaggccaacccaagtgggtt 85  Q
    |||||||||||| ||||||||||||||||||||    
T  41487394 aagccaataccaccaggccaacccaagtgggtt 41487362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 48079718 - 48079670
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||| |||||||||||||||| |||| ||||| |||| |||||||||||    
T  48079718 aatcaaacctgagacctcgagcaggaccacacacccaggtcccaagcca 48079670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 62)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10445140 - 10445188
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10445140 aatcgaacctgagacctcgaggaggagcacactcccaggtcccaagcca 10445188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36720456 - 36720408
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  36720456 aatcgaacctgaaacctcgaggaggagcacactcccatatcccaagcca 36720408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 44743856 - 44743904
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||    
T  44743856 aatcgaacctgagacctcgaggaggagcacactcccagatcccaagcca 44743904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2667937 - 2667889
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||||||||| |||||||||||||  ||||||||||    
T  2667937 aatcgaacctgagacctcgaggaagagcacactcccagatcccaagcca 2667889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 21960626 - 21960578
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||| |||||||||||||||||||||||||| || |||||||||||    
T  21960626 aatcgaatctgagacctcgaggaggagcacactctcaggtcccaagcca 21960578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 27259236 - 27259188
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||| ||||||| |||||||||||||||||||||||| |||||||||||    
T  27259236 aatcaaacctgaaacctcgaggaggagcacactcccaggtcccaagcca 27259188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 51903879 - 51903927
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||||||||| ||||||||||||||||||||  ||||||||||    
T  51903879 aatcgaacctgagaccacgaggaggagcacactcccagatcccaagcca 51903927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 8075128 - 8075175
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcc 48  Q
    |||||||||||| |||| ||||||||||||||||||| ||||||||||    
T  8075128 aatcgaacctgaaaccttgaggaggagcacactcccaagtcccaagcc 8075175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30311381 - 30311334
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcc 48  Q
    ||||||||||||||||| |||||||||||||||||||  |||||||||    
T  30311381 aatcgaacctgagaccttgaggaggagcacactcccagatcccaagcc 30311334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 47454618 - 47454652
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  47454618 aatcgaacctgagacctcgaggaggagcacactcc 47454652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4844512 - 4844557
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    |||||| ||||||||||||||||||||||||||||||  |||||||    
T  4844512 aatcgatcctgagacctcgaggaggagcacactcccagatcccaag 4844557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4870208 - 4870253
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    |||||| ||||||||||||||||||||||||||||||  |||||||    
T  4870208 aatcgatcctgagacctcgaggaggagcacactcccagatcccaag 4870253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 8853801 - 8853846
Alignment:
Q  2 atcgaacctgagacctcgaggaggagcacactcccatgtcccaagc 47  Q
    ||||||| ||||||||| |||||||||| |||||||||||||||||    
T  8853801 atcgaacatgagacctcaaggaggagcatactcccatgtcccaagc 8853846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 33899689 - 33899652
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccat 38  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  33899689 aatcgaacctgagacctagaggaggagcacactcccat 33899652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14339685 - 14339637
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||| | |||||||||||||||||||  ||||||||||    
T  14339685 aatcgaacctgagacattgaggaggagcacactcccaaatcccaagcca 14339637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27093362 - 27093410
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||| |||||||||||| ||||||||||||||||||| || ||||||||    
T  27093362 aatcaaacctgagaccttgaggaggagcacactcccaagttccaagcca 27093410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27923044 - 27923092
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||||||||   ||||||||||||||| |||||||||||||||    
T  27923044 aatcgaacctgagactatgaggaggagcacacttccatgtcccaagcca 27923092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30510200 - 30510248
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||||||| ||||||| ||||| | |||||||||||    
T  30510200 aatcgaacctgagacctcgagaaggagcatactcctaggtcccaagcca 30510248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31520606 - 31520654
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||| ||||| ||||||||||||||||||||||||||  ||||||||||    
T  31520606 aatcaaacctaagacctcgaggaggagcacactcccagatcccaagcca 31520654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32651439 - 32651487
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||| |||||| || ||||||||||||||||||| |||||||||||    
T  32651439 aatcgaatctgagatcttgaggaggagcacactcccaggtcccaagcca 32651487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 45229309 - 45229273
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    |||||||||||||||| ||||||||||||||||||||    
T  45229309 aatcgaacctgagaccacgaggaggagcacactccca 45229273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 45308903 - 45308947
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaa 45  Q
    ||||||||||||||||||||||||||||| |||| || |||||||    
T  45308903 aatcgaacctgagacctcgaggaggagcatactcacaagtcccaa 45308947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 52769984 - 52770020
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    |||||||||||||||||| ||||||||||||||||||    
T  52769984 aatcgaacctgagacctcaaggaggagcacactccca 52770020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 54990777 - 54990729
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| |||||||||||| |||| | |||||||||||    
T  54990777 aatcgaacctgagaccttgaggaggagcacgctccaaggtcccaagcca 54990729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 9557394 - 9557347
Alignment:
Q  2 atcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||| ||||||||||||||||||| ||  ||||||||||    
T  9557394 atcgaacctgagatctcgaggaggagcacactctcagatcccaagcca 9557347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 15048062 - 15048109
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcc 48  Q
    ||||||||||||||||| ||||||||||||| |||||  |||||||||    
T  15048062 aatcgaacctgagaccttgaggaggagcacattcccagatcccaagcc 15048109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 14186722 - 14186688
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcc 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  14186722 aatcgaacctgagaccttgaggaggagcacactcc 14186688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 28703405 - 28703451
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagc 47  Q
    ||||||||||||||||| || ||||||||||||||||  ||||||||    
T  28703405 aatcgaacctgagaccttgaagaggagcacactcccagatcccaagc 28703451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 37788466 - 37788500
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcc 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  37788466 aatcgaacctgagaccttgaggaggagcacactcc 37788500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 12761587 - 12761542
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    |||||||||||||| ||| ||||||| |||||||||| ||||||||    
T  12761587 aatcgaacctgagagctcaaggaggaacacactcccaggtcccaag 12761542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 30715817 - 30715772
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    |||||||||||| || | ||||||||||||||||||| ||||||||    
T  30715817 aatcgaacctgaaacattgaggaggagcacactcccaagtcccaag 30715772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 33861735 - 33861772
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccat 38  Q
    |||||||| | |||||||||||||||||||||||||||    
T  33861735 aatcgaacattagacctcgaggaggagcacactcccat 33861772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 39253772 - 39253727
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    ||||||||||||||||| || ||||||||||||||||  |||||||    
T  39253772 aatcgaacctgagaccttgaagaggagcacactcccagatcccaag 39253727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 2597223 - 2597255
Alignment:
Q  3 tcgaacctgagacctcgaggaggagcacactcc 35  Q
    |||||||||||||||| ||||||||||||||||    
T  2597223 tcgaacctgagacctcaaggaggagcacactcc 2597255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3427554 - 3427590
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  3427554 aatcgaatctgagaccttgaggaggagcacactccca 3427590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4222216 - 4222168
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||| |||| | |||||||||||||||||||  ||||||||||    
T  4222216 aatcgaacctaagactttgaggaggagcacactcccagatcccaagcca 4222168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 8051246 - 8051214
Alignment:
Q  53 aagccaataccatcaggccaacccaagtgggtt 85  Q
    |||||||||||| ||||||||||||||||||||    
T  8051246 aagccaataccaccaggccaacccaagtgggtt 8051214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 8051289 - 8051241
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||| ||||||||||||||| |||| ||| ||| |||||||||||    
T  8051289 aatcgaacttgagacctcgaggagaagcatactgccaggtcccaagcca 8051241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8170747 - 8170711
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  8170747 aatcgaacctgagaccttgagtaggagcacactccca 8170711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10499110 - 10499158
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||||||||||| |||| ||||| |||||||  ||||||||||    
T  10499110 aatcgaacctgagacctcaaggaagagcagactcccagatcccaagcca 10499158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 10499153 - 10499185
Alignment:
Q  53 aagccaataccatcaggccaacccaagtgggtt 85  Q
    |||||||||||| ||||||||||||||||||||    
T  10499153 aagccaataccaccaggccaacccaagtgggtt 10499185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 11090166 - 11090214
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||| || |||||||||||||||||||| |||||  ||||||||||    
T  11090166 aatcgaaactaagacctcgaggaggagcacattcccagatcccaagcca 11090214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 11612373 - 11612329
Alignment:
Q  2 atcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    ||||||||||||||||  ||||||||||||||||||  |||||||    
T  11612373 atcgaacctgagaccttaaggaggagcacactcccagctcccaag 11612329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16354893 - 16354941
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||  |||||||||||||||| || || ||||||||    
T  16354893 aatcgaacctgagaccctgaggaggagcacactcacaggttccaagcca 16354941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16900682 - 16900730
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||| |||||||| || |||||||||||||| | |||||||||||    
T  16900682 aatcgaacatgagaccttgacgaggagcacactccaaggtcccaagcca 16900730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 16991574 - 16991534
Alignment:
Q  53 aagccaataccatcaggccaacccaagtgggttaagactat 93  Q
    |||||||||||| ||||||||||||| |||||||| |||||    
T  16991574 aagccaataccaccaggccaacccaaatgggttaacactat 16991534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 17108899 - 17108935
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    |||| |||||||||||| |||||||||||||||||||    
T  17108899 aatcaaacctgagaccttgaggaggagcacactccca 17108935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 17554842 - 17554798
Alignment:
Q  5 gaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||| ||| ||||| ||||||||||||| |||||||||||    
T  17554842 gaacctgagcccttgaggaagagcacactcccaggtcccaagcca 17554798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 17765202 - 17765166
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    |||||||||||||| || |||||||||||||||||||    
T  17765202 aatcgaacctgagatcttgaggaggagcacactccca 17765166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 19066522 - 19066486
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    |||||||||||||| || |||||||||||||||||||    
T  19066522 aatcgaacctgagatcttgaggaggagcacactccca 19066486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 19716272 - 19716224
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||| ||||||| |||||||||||||||||   |||||||||||    
T  19716272 aatcgaaccagagaccttgaggaggagcacactccatggtcccaagcca 19716224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 20501771 - 20501727
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaa 45  Q
    |||||||||||||||||  ||||||||||||||| || |||||||    
T  20501771 aatcgaacctgagaccttaaggaggagcacactctcaggtcccaa 20501727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 24460022 - 24459990
Alignment:
Q  53 aagccaataccatcaggccaacccaagtgggtt 85  Q
    |||||||||||| ||||||||||||||||||||    
T  24460022 aagccaataccaccaggccaacccaagtgggtt 24459990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 25035780 - 25035732
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||||| | |||||||||||||||| || || |||||||||||    
T  25035780 aatcgaacctgaaatctcgaggaggagcacattctcaggtcccaagcca 25035732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 31608533 - 31608561
Alignment:
Q  9 ctgagacctcgaggaggagcacactccca 37  Q
    |||||||||||||||||||||||||||||    
T  31608533 ctgagacctcgaggaggagcacactccca 31608561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31788971 - 31789019
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||| ||||| | ||||||||||||||||||||||||  ||||||||||    
T  31788971 aatcaaacctaaaacctcgaggaggagcacactcccagatcccaagcca 31789019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35111255 - 35111219
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    |||||||| |||||||||||||| |||||||||||||    
T  35111255 aatcgaacatgagacctcgaggatgagcacactccca 35111219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 46518703 - 46518655
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||| ||||||| |||| |||||||||||||||||||  ||||||||||    
T  46518703 aatcaaacctgaaaccttgaggaggagcacactcccagatcccaagcca 46518655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 49397542 - 49397578
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  49397542 aatcgaacatgagacctcgaggagaagcacactccca 49397578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 49452944 - 49452912
Alignment:
Q  5 gaacctgagacctcgaggaggagcacactccca 37  Q
    ||||||||||||| |||||||||||||||||||    
T  49452944 gaacctgagaccttgaggaggagcacactccca 49452912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #61
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 49494147 - 49494183
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    |||| |||||||||||||||||| |||||||||||||    
T  49494147 aatcaaacctgagacctcgaggaagagcacactccca 49494183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #62
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 53413016 - 53412984
Alignment:
Q  5 gaacctgagacctcgaggaggagcacactccca 37  Q
    ||||||||||||| |||||||||||||||||||    
T  53413016 gaacctgagaccttgaggaggagcacactccca 53412984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 19238578 - 19238655
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagccattgaagccaataccatcaggccaacccaagtgggttaa 87  Q
    ||||||||| ||||||||||||||||||||||||||| |||||         |||||||||||| ||||||||||||||||||||||    
T  19238578 aatcgaacccgagacctcgaggaggagcacactcccaagtccc---------aagccaataccaccaggccaacccaagtgggttaa 19238655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 39509145 - 39509095
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagccatt 51  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  39509145 aatcgaacctgagacctcgaggaggagcacactcccagatcccaagccatt 39509095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 23378031 - 23377983
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  23378031 aatcgaacctgagaccttgaggaggagcacactcccaggtcccaagcca 23377983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37109352 - 37109400
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  37109352 aatcgaacctgagaccttgaggaggagcacactcccaggtcccaagcca 37109400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 46295172 - 46295124
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  46295172 aatcgaacctgagaccttgaggaggagcacactccaatgtcccaagcca 46295124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2622396 - 2622444
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||| | ||||||||||||||||||| |||||||||||    
T  2622396 aatcgaacctgagacatggaggaggagcacactcccaggtcccaagcca 2622444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7949455 - 7949503
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| ||||||||||||||||| | |||||||||||    
T  7949455 aatcgaacctgagaccttgaggaggagcacactccgaggtcccaagcca 7949503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13015502 - 13015454
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||| |||||| ||||||||||||||||||||| |||||||||||    
T  13015502 aatcgaacatgagacttcgaggaggagcacactcccaagtcccaagcca 13015454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31759659 - 31759707
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||| ||||||||| ||||||||||||||||||| |||||||||||    
T  31759659 aatcgaatctgagaccttgaggaggagcacactcccaagtcccaagcca 31759707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37274460 - 37274508
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||| |||||| ||||||||||||||||||| |||||||||||    
T  37274460 aatcgaacctaagaccttgaggaggagcacactcccaggtcccaagcca 37274508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 38869843 - 38869795
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| |||||||||||||||||||  ||||||||||    
T  38869843 aatcgaacctgagaccttgaggaggagcacactcccagatcccaagcca 38869795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 49576895 - 49576943
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| ||||||||||||||||||| |||| ||||||    
T  49576895 aatcgaacctgagaccttgaggaggagcacactcccaagtccaaagcca 49576943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 55427201 - 55427276
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagccattgaagccaataccatcaggccaacccaagtgggtt 85  Q
    ||||||||||||||||||||| ||||||| ||||||| |||||||||         |||||||| ||||||||||||||||||||    
T  55427201 aatcgaacctgagacctcgagcaggagcagactcccaggtcccaagc---------caataccaccaggccaacccaagtgggtt 55427276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 8030205 - 8030252
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcc 48  Q
    |||||||| |||||||| ||||||||||||||||||| ||||||||||    
T  8030205 aatcgaacttgagaccttgaggaggagcacactcccaagtcccaagcc 8030252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 46329239 - 46329192
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcc 48  Q
    |||||||||||| |||| ||||||||||||||||||| ||||||||||    
T  46329239 aatcgaacctgataccttgaggaggagcacactcccaggtcccaagcc 46329192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 24827897 - 24827855
Alignment:
Q  4 cgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    ||||||||||||||||||||||||| |||||||| ||||||||    
T  24827897 cgaacctgagacctcgaggaggagcgcactcccaggtcccaag 24827855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 30938220 - 30938254
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  30938220 aatcgaacctgagacctcgaggaggagcacactcc 30938254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 17618353 - 17618308
Alignment:
Q  4 cgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||| |||||||||||||||||||||||||||| ||| |||||||    
T  17618353 cgaacatgagacctcgaggaggagcacactcccaggtctcaagcca 17618308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 51954189 - 51954144
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    |||| |||||||||||||||||||||||| ||||||| ||||||||    
T  51954189 aatcaaacctgagacctcgaggaggagcatactcccaagtcccaag 51954144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7292799 - 7292847
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||| | ||||||||||||||||||| || ||||||||    
T  7292799 aatcgaacctgagactttgaggaggagcacactcccaggttccaagcca 7292847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 32992687 - 32992639
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||| |||||||| ||||||||||||||||| | |||||||||||    
T  32992687 aatcgaacttgagaccttgaggaggagcacactccaaggtcccaagcca 32992639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37720215 - 37720263
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||| ||||| ||||||| ||||||||||| |||||||||||    
T  37720215 aatcgaacctgggaccttgaggaggggcacactcccaggtcccaagcca 37720263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 2185033 - 2185083
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagccatt 51  Q
    ||||||||||||||| | ||| ||||||||||||||| || ||||||||||    
T  2185033 aatcgaacctgagactttgagaaggagcacactcccaggttccaagccatt 2185083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 19229209 - 19229239
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcaca 31  Q
    |||||||||||||||||||||||||||||||    
T  19229209 aatcgaacctgagacctcgaggaggagcaca 19229239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 19680789 - 19680835
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagc 47  Q
    |||||||||| |||||| ||||| ||||||||||||| |||||||||    
T  19680789 aatcgaacctaagaccttgaggaagagcacactcccaagtcccaagc 19680835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 9241069 - 9241102
Alignment:
Q  53 aagccaataccatcaggccaacccaagtgggtta 86  Q
    |||||||||||| |||||||||||||||||||||    
T  9241069 aagccaataccaccaggccaacccaagtgggtta 9241102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 9936962 - 9937007
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    |||||||||||| || ||||||||||||||||||||| ||| ||||    
T  9936962 aatcgaacctgaaacttcgaggaggagcacactcccaagtctcaag 9937007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 11592154 - 11592199
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    |||||||||| |||||| |||||||||||||||| || ||||||||    
T  11592154 aatcgaacctaagacctggaggaggagcacactctcaggtcccaag 11592199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 28635771 - 28635726
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    |||||||||| ||||||| ||||||||||||||||||  |||||||    
T  28635771 aatcgaacctaagacctccaggaggagcacactcccagatcccaag 28635726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 44865366 - 44865333
Alignment:
Q  53 aagccaataccatcaggccaacccaagtgggtta 86  Q
    ||||||| ||||||||||||||||||||||||||    
T  44865366 aagccaacaccatcaggccaacccaagtgggtta 44865333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 47044792 - 47044759
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactc 34  Q
    ||||||||||||||||||||||||||||| ||||    
T  47044792 aatcgaacctgagacctcgaggaggagcaaactc 47044759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12798759 - 12798723
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  12798759 aatcgaacctgaaacctcgaggagcagcacactccca 12798723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 16581764 - 16581720
Alignment:
Q  5 gaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||| ||||||||||| ||||||| || ||||||||    
T  16581764 gaacctgagaccttgaggaggagcagactcccaggttccaagcca 16581720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 21660145 - 21660181
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    |||||||| |||||||||||||| |||||||||||||    
T  21660145 aatcgaacttgagacctcgaggaagagcacactccca 21660181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 21668909 - 21668945
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    |||||||| |||||||||||||| |||||||||||||    
T  21668909 aatcgaacttgagacctcgaggaagagcacactccca 21668945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 24234720 - 24234672
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||| ||||||||  |||| ||||||||||||| |||||||||||    
T  24234720 aatcgaacttgagaccttcaggatgagcacactcccaagtcccaagcca 24234672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37980149 - 37980196
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| ||| ||||||||||||| | |||||||||||    
T  37980149 aatcgaacctgagaccttgag-aggagcacactccaaggtcccaagcca 37980196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 41346964 - 41347000
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  41346964 aatcgaacctgagacttcgaggaggagcatactccca 41347000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 51250566 - 51250598
Alignment:
Q  53 aagccaataccatcaggccaacccaagtgggtt 85  Q
    |||||||||||| ||||||||||||||||||||    
T  51250566 aagccaataccaccaggccaacccaagtgggtt 51250598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 51622558 - 51622526
Alignment:
Q  3 tcgaacctgagacctcgaggaggagcacactcc 35  Q
    ||||||||||||||| |||||||||||||||||    
T  51622558 tcgaacctgagaccttgaggaggagcacactcc 51622526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 56410025 - 56409978
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| ||| ||||||||||||| | |||||||||||    
T  56410025 aatcgaacctgagaccttgag-aggagcacactccaaggtcccaagcca 56409978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 16773882 - 16773837
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  16773882 aatcgaacctgagacctcgaggaggagcacactcccaggtcccaag 16773837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14285236 - 14285188
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| ||||||||||||||||||| || ||||||||    
T  14285236 aatcgaacctgagaccttgaggaggagcacactcccaggttccaagcca 14285188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 25627132 - 25627084
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| ||||||||||||||||||| || ||||||||    
T  25627132 aatcgaacctgagaccttgaggaggagcacactcccaagttccaagcca 25627084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30109309 - 30109357
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||||||||||| |||||||||||||||||| ||| |||||||    
T  30109309 aatcgaacctgagacctcaaggaggagcacactcccaggtcacaagcca 30109357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 4793094 - 4793133
Alignment:
Q  6 aacctgagacctcgaggaggagcacactcccatgtcccaa 45  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  4793094 aacctgagacctcgaggaggagcacactcccaggtcccaa 4793133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 84899 - 84849
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagccatt 51  Q
    |||||||| |||||||| |||||||||||||||||||  ||||||||||||    
T  84899 aatcgaacttgagaccttgaggaggagcacactcccagatcccaagccatt 84849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 8278276 - 8278353
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagccattgaagccaataccatcaggccaacccaagtgggttaa 87  Q
    |||| ||| ||||| |||||||||||||||||||||| |||||         |||||||||||||||| ||||||||||||||||||    
T  8278276 aatcaaacttgagatctcgaggaggagcacactcccaagtccc---------aagccaataccatcagaccaacccaagtgggttaa 8278353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 39327091 - 39327137
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagc 47  Q
    ||||||| || |||||| |||||||||||||||||||||||||||||    
T  39327091 aatcgaagctaagaccttgaggaggagcacactcccatgtcccaagc 39327137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 1410668 - 1410705
Alignment:
Q  9 ctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    |||||||||||||||||||||||||||||| |||||||    
T  1410668 ctgagacctcgaggaggagcacactcccatatcccaag 1410705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 9842851 - 9842892
Alignment:
Q  5 gaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    ||||| ||||||||||||||||||||||||||| ||||||||    
T  9842851 gaacccgagacctcgaggaggagcacactcccaagtcccaag 9842892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 17028265 - 17028309
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaa 45  Q
    |||| |||||||||||| ||||||||||||||||||| |||||||    
T  17028265 aatcaaacctgagaccttgaggaggagcacactcccaagtcccaa 17028309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 21589363 - 21589315
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||| |||||||| |||| ||||||| |||||||||||    
T  21589363 aatcgaacctgagacatcgaggagtagcagactcccaggtcccaagcca 21589315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29075856 - 29075808
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||| ||||| ||||||||||||||||||||||  ||||||||||    
T  29075856 aatcgaacatgagatctcgaggaggagcacactcccagatcccaagcca 29075808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 30883203 - 30883247
Alignment:
Q  5 gaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||| |||||||| ||||||||||||||||||| |||||||||||    
T  30883203 gaacttgagaccttgaggaggagcacactcccaggtcccaagcca 30883247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34984881 - 34984833
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||| |||||| ||||||||||||||||||| || ||||||||    
T  34984881 aatcgaacctaagaccttgaggaggagcacactcccaggttccaagcca 34984833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 43442271 - 43442235
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    ||||||||||||||||| |||||||||||||||||||    
T  43442271 aatcgaacctgagaccttgaggaggagcacactccca 43442235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 35982763 - 35982716
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcc 48  Q
    ||||||||||||||| |||  ||||||||||||| |||||||||||||    
T  35982763 aatcgaacctgagacatcgtagaggagcacactctcatgtcccaagcc 35982716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 8779311 - 8779345
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcc 35  Q
    |||||||||||| ||||||||||||||||||||||    
T  8779311 aatcgaacctgaaacctcgaggaggagcacactcc 8779345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 29173565 - 29173531
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcc 35  Q
    |||||||||||| ||||||||||||||||||||||    
T  29173565 aatcgaacctgaaacctcgaggaggagcacactcc 29173531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 5390853 - 5390882
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcac 30  Q
    ||||||||||||||||||||||||||||||    
T  5390853 aatcgaacctgagacctcgaggaggagcac 5390882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 14495814 - 14495851
Alignment:
Q  9 ctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    |||||||||||||||||||||||||||||  |||||||    
T  14495814 ctgagacctcgaggaggagcacactcccagatcccaag 14495851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 35360087 - 35360120
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactc 34  Q
    |||||||||||||||||||||||| |||||||||    
T  35360087 aatcgaacctgagacctcgaggagaagcacactc 35360120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 87424 - 87460
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    |||| |||||||||||| |||||||||||||||||||    
T  87424 aatcaaacctgagaccttgaggaggagcacactccca 87460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6844804 - 6844768
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  6844804 aatcgaaccttagacctcgaggaggaacacactccca 6844768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15485421 - 15485468
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| ||| ||||||||||||| | |||||||||||    
T  15485421 aatcgaacctgagaccttgag-aggagcacactccaaggtcccaagcca 15485468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 16436692 - 16436645
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||| |||||||| ||||||||||||||| ||| |||||||||||    
T  16436692 aatcgaacatgagaccttgaggaggagcacact-ccaagtcccaagcca 16436645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 16457881 - 16457837
Alignment:
Q  5 gaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||| |||||||| ||||||||||||||||| | |||||||||||    
T  16457881 gaacatgagaccttgaggaggagcacactccaaggtcccaagcca 16457837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 18596002 - 18596050
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||| |||||| ||||||||||||| ||||| ||| |||||||    
T  18596002 aatcgaacctaagaccttgaggaggagcacattcccaggtcacaagcca 18596050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 21549138 - 21549186
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||| |||||| |  |||||||||||||||||| |||||||||||    
T  21549138 aatcgaacttgagactttaaggaggagcacactcccaggtcccaagcca 21549186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 21589320 - 21589288
Alignment:
Q  53 aagccaataccatcaggccaacccaagtgggtt 85  Q
    |||||||||||| ||||||||||||||||||||    
T  21589320 aagccaataccaccaggccaacccaagtgggtt 21589288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22737157 - 22737109
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||| | | ||||||||||||| ||| |||||||||||    
T  22737157 aatcgaacctgagacattggggaggagcacacttccaagtcccaagcca 22737109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25979245 - 25979209
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  25979245 aatcgaacctgagaccttgaggaggagaacactccca 25979209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 36497707 - 36497675
Alignment:
Q  53 aagccaataccatcaggccaacccaagtgggtt 85  Q
    |||||||||||||||||||||| ||||||||||    
T  36497707 aagccaataccatcaggccaactcaagtgggtt 36497675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 43)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 39715067 - 39715022
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  39715067 aatcgaacctgagacctcgaggaggagcacactcccaggtcccaag 39715022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 42327396 - 42327444
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  42327396 aatcgaacctgagaccttgaggaggagcacactcccaggtcccaagcca 42327444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 28846766 - 28846721
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||    
T  28846766 aatcgaacctgagacatcgaggaggagcacactcccaggtcccaag 28846721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4262303 - 4262351
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| ||||||||||||||| ||| |||||||||||    
T  4262303 aatcgaacctgagaccttgaggaggagcacactgccaggtcccaagcca 4262351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7799036 - 7799084
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||| |||||| |||||||||||||||||||||| |||||||||||    
T  7799036 aatcgaatctgagatctcgaggaggagcacactcccaagtcccaagcca 7799084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 21213844 - 21213796
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||||||||||| ||||||| |||||||||| |||||||||||    
T  21213844 aatcgaacctgagacctcaaggaggaacacactcccaggtcccaagcca 21213796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 23052524 - 23052572
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| |||||| |||||||||||| |||||||||||    
T  23052524 aatcgaacctgagaccttgaggagaagcacactcccaagtcccaagcca 23052572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 29503346 - 29503302
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaa 45  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||    
T  29503346 aatcgaacctgagaccttgaggaggagcacactcccaggtcccaa 29503302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 33839265 - 33839305
Alignment:
Q  5 gaacctgagacctcgaggaggagcacactcccatgtcccaa 45  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  33839265 gaacctgagaccttgaggaggagcacactcccatgtcccaa 33839305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37480150 - 37480102
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| |||||||||||||||| || |||||||||||    
T  37480150 aatcgaacctgagaccttgaggaggagcacactctcaggtcccaagcca 37480102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 21195677 - 21195724
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcc 48  Q
    ||||||||||||||||| ||||||||||||||||||| || |||||||    
T  21195677 aatcgaacctgagaccttgaggaggagcacactcccaagttccaagcc 21195724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 42860423 - 42860378
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    |||||||| |||||||||||||||||||||||||||| ||| ||||    
T  42860423 aatcgaacttgagacctcgaggaggagcacactcccaggtctcaag 42860378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11251162 - 11251114
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||| |||||||||||| ||||||||||||||| ||| |||||||||||    
T  11251162 aatcaaacctgagaccttgaggaggagcacacttccaagtcccaagcca 11251114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 12086130 - 12086178
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||| ||||||| ||||||||||||||| ||| |||||||||||    
T  12086130 aatcgaacccgagaccttgaggaggagcacacttccaggtcccaagcca 12086178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13803570 - 13803522
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| ||||||||||||||||| | ||| |||||||    
T  13803570 aatcgaacctgagaccttgaggaggagcacactcctaagtctcaagcca 13803522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 19016106 - 19016058
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||| ||| |||||||||||||||||||||||||||| ||| |||||||    
T  19016106 aatcaaacttgagacctcgaggaggagcacactcccaagtctcaagcca 19016058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 21939124 - 21939172
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||||||| ||||||||||||||||||| || |||| ||||||    
T  21939124 aatcgaacctgagatctcgaggaggagcacactctcaagtccaaagcca 21939172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 32687556 - 32687512
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaa 45  Q
    |||||||||||||||||||||||||| ||||||| || |||||||    
T  32687556 aatcgaacctgagacctcgaggaggaacacactctcaagtcccaa 32687512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 33569859 - 33569907
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||||||||| ||||||||| ||| |||| ||||||    
T  33569859 aatcgaacctgagacctcgaggaagagcacacttccaagtcctaagcca 33569907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33582048 - 33582004
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaa 45  Q
    |||||||||||||||||| ||||||||||||||| || |||||||    
T  33582048 aatcgaacctgagacctcaaggaggagcacactctcaggtcccaa 33582004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 37755974 - 37756020
Alignment:
Q  3 tcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||| |||||||||||| ||||||||| ||||| |||||||||||    
T  37755974 tcgaacttgagacctcgagtaggagcacattcccaggtcccaagcca 37756020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 1729880 - 1729843
Alignment:
Q  12 agacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  1729880 agacctagaggaggagcacactcccaagtcccaagcca 1729843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 12994377 - 12994422
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    |||||||| ||||||||  |||||||||||||||||| ||||||||    
T  12994377 aatcgaacttgagaccttaaggaggagcacactcccaggtcccaag 12994422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 16525210 - 16525177
Alignment:
Q  53 aagccaataccatcaggccaacccaagtgggtta 86  Q
    ||||||| ||||||||||||||||||||||||||    
T  16525210 aagccaacaccatcaggccaacccaagtgggtta 16525177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 19244184 - 19244139
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    ||||||||||||||||| | |||||||||||||| || ||||||||    
T  19244184 aatcgaacctgagaccttggggaggagcacactctcaggtcccaag 19244139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 25637223 - 25637190
Alignment:
Q  4 cgaacctgagacctcgaggaggagcacactccca 37  Q
    |||||||||||||||||| |||||||||||||||    
T  25637223 cgaacctgagacctcgagaaggagcacactccca 25637190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 29197377 - 29197422
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    |||||||| |||||| || |||||||||||||||||| ||||||||    
T  29197377 aatcgaacatgagacatcaaggaggagcacactcccaagtcccaag 29197422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 30907633 - 30907674
Alignment:
Q  5 gaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    |||| |||||| ||||||||||||||||||||| ||||||||    
T  30907633 gaacatgagacgtcgaggaggagcacactcccaagtcccaag 30907674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42922490 - 42922441
Alignment:
Q  1 aatcgaacctgagacctc-gaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||||||||||  ||||||||||||||||||| || ||||||||    
T  42922490 aatcgaacctgagacctttgaggaggagcacactcccaggttccaagcca 42922441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 3697443 - 3697475
Alignment:
Q  53 aagccaataccatcaggccaacccaagtgggtt 85  Q
    |||||||||||||||| ||||||||||||||||    
T  3697443 aagccaataccatcagaccaacccaagtgggtt 3697475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6099520 - 6099567
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| ||| ||||||||||||| | |||||||||||    
T  6099520 aatcgaacctgagaccttgag-aggagcacactccaaggtcccaagcca 6099567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7667470 - 7667518
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||| || |||| ||| |||||||||||||||||| |||||||||||    
T  7667470 aatcgagccggagatctcaaggaggagcacactcccaagtcccaagcca 7667518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11062435 - 11062387
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||| |||||||||||| |||||| |||||||||||| || ||||||||    
T  11062435 aatcaaacctgagaccttgaggagaagcacactcccaagttccaagcca 11062387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 14500352 - 14500316
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  14500352 aatcgaatctgagacctagaggaggagcacactccca 14500316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 17737625 - 17737661
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    |||||||| |||||||| |||||||||||||||||||    
T  17737625 aatcgaacatgagaccttgaggaggagcacactccca 17737661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 19016063 - 19016031
Alignment:
Q  53 aagccaataccatcaggccaacccaagtgggtt 85  Q
    |||||||||||||||| ||||||||||||||||    
T  19016063 aagccaataccatcagaccaacccaagtgggtt 19016031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 23140913 - 23140961
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||| ||||| | |||||||| ||||| ||||||||||||||||    
T  23140913 aatcgaaccagagacattgaggaggaacacacacccatgtcccaagcca 23140961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 23552703 - 23552751
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||| ||||| | |||||||| ||||| ||||||||||||||||    
T  23552703 aatcgaaccagagacattgaggaggaacacacacccatgtcccaagcca 23552751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 26482167 - 26482120
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| ||| ||||||||||||| | |||||||||||    
T  26482167 aatcgaacctgagaccttgag-aggagcacactcctaggtcccaagcca 26482120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27244383 - 27244339
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaa 45  Q
    |||||||||| | |||||||||||||||| ||||||| |||||||    
T  27244383 aatcgaaccttaaacctcgaggaggagcatactcccaggtcccaa 27244339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30410550 - 30410598
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||| |||| ||| ||||||||||||||||| | |||||||||||    
T  30410550 aatcgaacatgagtccttgaggaggagcacactcctaggtcccaagcca 30410598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 37480107 - 37480075
Alignment:
Q  53 aagccaataccatcaggccaacccaagtgggtt 85  Q
    |||||||||||| ||||||||||||||||||||    
T  37480107 aagccaataccaccaggccaacccaagtgggtt 37480075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42602629 - 42602581
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||| ||||| |||||| ||| ||||||||||||||| |||||||||||    
T  42602629 aatcaaacctaagaccttgagaaggagcacactcccaggtcccaagcca 42602581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11603 - 11555
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||    
T  11603 aatcgaacctgagacctcgaggaggagcacactcccagatcccaagcca 11555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 47)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 21547481 - 21547529
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  21547481 aatcgaacctgaaacctcgaggaggagcaccctcccatgtcccaagcca 21547529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 6122869 - 6122822
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcc 48  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  6122869 aatcgaacctgagaccttgaggaggagcacactcccaagtcccaagcc 6122822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15786321 - 15786369
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| |||||||||||||||||||  ||||||||||    
T  15786321 aatcgaacctgagaccttgaggaggagcacactcccagatcccaagcca 15786369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31383799 - 31383847
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||||||||| | |||||||||||||||||| |||||||||||    
T  31383799 aatcgaacctgagaccccaaggaggagcacactcccaggtcccaagcca 31383847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 7219919 - 7219962
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtccca 44  Q
    ||||||||||||||| |||||||||||||||||| |||||||||    
T  7219919 aatcgaacctgagacttcgaggaggagcacactctcatgtccca 7219962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 12370238 - 12370192
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagc 47  Q
    |||| ||| |||||||||||||||||||||||||||| |||||||||    
T  12370238 aatcaaacatgagacctcgaggaggagcacactcccaggtcccaagc 12370192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 15065036 - 15064961
Alignment:
Q  5 gaacctgagacctcgaggaggagcacactcccatgtcccaagccattgaagccaataccatcaggccaacccaagtgggtta 86  Q
    ||||||||||||| ||||| |||||||||| || |||| |||      ||||||||| ||||||||||||||||||||||||    
T  15065036 gaacctgagaccttgaggatgagcacactctcaggtcctaag------aagccaatatcatcaggccaacccaagtgggtta 15064961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 3265999 - 3265954
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    ||||||||||||||||| ||||||||||||||||||| || |||||    
T  3265999 aatcgaacctgagaccttgaggaggagcacactcccaagttccaag 3265954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 12587345 - 12587312
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  12587345 aatcgaacctgagacctcgaggaggagcacactc 12587312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2799937 - 2799901
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    ||||||||||||||||| |||||||||||||||||||    
T  2799937 aatcgaacctgagaccttgaggaggagcacactccca 2799901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4566623 - 4566575
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||  ||||||||||||||||||| || ||||||||    
T  4566623 aatcgaacctgagaccctgaggaggagcacactcccaggttccaagcca 4566575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 8177183 - 8177231
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||||| |||| |||||||||||||||||||  ||||||||||    
T  8177183 aatcgaacctgaaaccttgaggaggagcacactcccagatcccaagcca 8177231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 9165200 - 9165244
Alignment:
Q  5 gaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||| | ||||||||||||||||||| |||||||||||    
T  9165200 gaacctgagactttgaggaggagcacactcccaggtcccaagcca 9165244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10526898 - 10526850
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||| ||||||||| ||||||||||| ||||||| |||||||||||    
T  10526898 aatcgaatctgagaccttgaggaggagcaaactcccaggtcccaagcca 10526850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 16893469 - 16893433
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    ||||||||||||||||||||||||||| |||||||||    
T  16893469 aatcgaacctgagacctcgaggaggagtacactccca 16893433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 17745257 - 17745305
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||| ||||||||||||||||||||||| | || |||||||||||    
T  17745257 aatcgaacatgagacctcgaggaggagcacacgctcaggtcccaagcca 17745305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 24047103 - 24047151
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||| ||| |||||||||||||||||||||||| ||| |||||||    
T  24047103 aatcgaacttgaaacctcgaggaggagcacactcccaagtctcaagcca 24047151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33700774 - 33700810
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    ||||||||||||||||| |||||||||||||||||||    
T  33700774 aatcgaacctgagaccttgaggaggagcacactccca 33700810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36371545 - 36371497
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||| |||||| ||||||||||||||||||| || ||||||||    
T  36371545 aatcgaacctcagaccttgaggaggagcacactcccaggttccaagcca 36371497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 38947473 - 38947509
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    ||||||||||||||||| |||||||||||||||||||    
T  38947473 aatcgaacctgagaccttgaggaggagcacactccca 38947509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 40257470 - 40257426
Alignment:
Q  5 gaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||| |||||||||||||||||||||||||||| ||| |||||||    
T  40257470 gaacttgagacctcgaggaggagcacactcccaggtctcaagcca 40257426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 50901657 - 50901609
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||  |||||||||||||||||||||||| ||| |||||||||||    
T  50901657 aatcgaatttgagacctcgaggaggagcacactaccaggtcccaagcca 50901609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 52116786 - 52116830
Alignment:
Q  5 gaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||| | ||||||||||||||||||| |||||||||||    
T  52116786 gaacctgagacattgaggaggagcacactcccaagtcccaagcca 52116830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 9117194 - 9117147
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcc 48  Q
    |||||||||||||||||| |||||||||||||| |||  |||||||||    
T  9117194 aatcgaacctgagacctcaaggaggagcacacttccagatcccaagcc 9117147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 8904489 - 8904444
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    |||||||| |||||||| |||||||||||||||| ||| |||||||    
T  8904489 aatcgaacttgagaccttgaggaggagcacactcacatatcccaag 8904444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 12259335 - 12259290
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    |||||||| |||||| |||||||||||||||||||||  |||||||    
T  12259335 aatcgaacttgagacttcgaggaggagcacactcccaaatcccaag 12259290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 16169979 - 16170024
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaag 46  Q
    |||||||||||| |||| |||||||| |||||||||| ||||||||    
T  16169979 aatcgaacctgaaaccttgaggaggaacacactcccaggtcccaag 16170024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 18459243 - 18459280
Alignment:
Q  12 agacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  18459243 agacctcaaggaggagcacactcccaagtcccaagcca 18459280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 19528328 - 19528361
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactc 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  19528328 aatcgaacctgagaccttgaggaggagcacactc 19528361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 21268005 - 21268042
Alignment:
Q  12 agacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  21268005 agacctagaggaggagcacactcccaagtcccaagcca 21268042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 31794276 - 31794313
Alignment:
Q  12 agacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  31794276 agaccttgaggaggagcacactcccaagtcccaagcca 31794313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 51013138 - 51013175
Alignment:
Q  12 agacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  51013138 agacctcgaagaggatcacactcccatgtcccaagcca 51013175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 51814569 - 51814536
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactc 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  51814569 aatcgaacctgagaccttgaggaggagcacactc 51814536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 952586 - 952538
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||| |||||||||| | ||||| ||||||||||||| |||||||||||    
T  952586 aatctaacctgagactttgaggatgagcacactcccaggtcccaagcca 952538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 1247188 - 1247152
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  1247188 aatcgaacctgagaccttgaggaggagtacactccca 1247152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 2220047 - 2220015
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacact 33  Q
    |||||||||||||||||||||||| ||||||||    
T  2220047 aatcgaacctgagacctcgaggagaagcacact 2220015  T

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Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4825046 - 4824998
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||| |||||||||||| || |||||||||||||| | |||||||||||    
T  4825046 aatcaaacctgagaccttgaagaggagcacactccaaggtcccaagcca 4824998  T

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Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 12662357 - 12662325
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacact 33  Q
    ||||||||||||||| |||||||||||||||||    
T  12662357 aatcgaacctgagacatcgaggaggagcacact 12662325  T

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Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 17439992 - 17439956
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  17439992 aatcaaacatgagacctcgaggaggagcacactccca 17439956  T

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Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 19528371 - 19528403
Alignment:
Q  53 aagccaataccatcaggccaacccaagtgggtt 85  Q
    |||||||||||| ||||||||||||||||||||    
T  19528371 aagccaataccaccaggccaacccaagtgggtt 19528403  T

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Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 21392911 - 21392879
Alignment:
Q  2 atcgaacctgagacctcgaggaggagcacactc 34  Q
    |||||||||||||||| ||||||||||||||||    
T  21392911 atcgaacctgagaccttgaggaggagcacactc 21392879  T

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Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27476772 - 27476820
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||| ||| ||||| |||||||||||||||||||| | |||||||||||    
T  27476772 aatcaaacttgagatctcgaggaggagcacactcctaagtcccaagcca 27476820  T

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Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31605849 - 31605897
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||| |||||||| ||||||||||||||| | | |||||||||||    
T  31605849 aatcgaacttgagaccttgaggaggagcacacttcaaggtcccaagcca 31605897  T

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Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 40257431 - 40257399
Alignment:
Q  53 aagccaataccatcaggccaacccaagtgggtt 85  Q
    |||||||||||| ||||||||||||||||||||    
T  40257431 aagccaataccaccaggccaacccaagtgggtt 40257399  T

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Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 43446038 - 43445990
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||| |||||||| ||||||||||||||||| | | |||||||||    
T  43446038 aatcgaacatgagaccttgaggaggagcacactccaaggacccaagcca 43445990  T

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Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 85
Target Start/End: Complemental strand, 51814522 - 51814494
Alignment:
Q  57 caataccatcaggccaacccaagtgggtt 85  Q
    |||||||||||||||||||||||||||||    
T  51814522 caataccatcaggccaacccaagtgggtt 51814494  T

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Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 52336775 - 52336823
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||||||| ||  ||||||||||||||||||  ||||||||||    
T  52336775 aatcgaacctgagatcttaaggaggagcacactcccagatcccaagcca 52336823  T

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Target: scaffold1367 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 841 - 889
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||| ||||||||||||||| |||||  ||||||||||    
T  841 aatcgaacctgagacttcgaggaggagcacattcccagatcccaagcca 889  T

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Target: scaffold0291 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 2471 - 2507
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    ||||||||||||||||| |||||||||||||||||||    
T  2471 aatcgaacctgagaccttgaggaggagcacactccca 2507  T

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Target: scaffold0194 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 13047 - 13083
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactccca 37  Q
    ||||||||||||||||| |||||||||||||||||||    
T  13047 aatcgaacctgagaccttgaggaggagcacactccca 13083  T

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Target: scaffold0180 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 19963 - 20011
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| ||||||||||| ||||||| || ||||||||    
T  19963 aatcgaacctgagaccttgaggaggagcatactcccaggttccaagcca 20011  T

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Target: scaffold0126 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 25348 - 25396
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||||||| ||| ||||||||||||||| ||| |||||||    
T  25348 aatcgaacctgagaccttgagaaggagcacactcccaagtctcaagcca 25396  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 94976 - 95020
Alignment:
Q  5 gaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    ||||||||||||| ||||||||||||||||||| || ||||||||    
T  94976 gaacctgagaccttgaggaggagcacactcccaggttccaagcca 95020  T

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Target: scaffold0122 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 6921 - 6968
Alignment:
Q  2 atcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||||||| | ||||||||||||||||||  |||||||||||    
T  6921 atcgaacctgagactttgaggaggagcacactccccagtcccaagcca 6968  T

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Target: scaffold0417 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 10251 - 10219
Alignment:
Q  53 aagccaataccatcaggccaacccaagtgggtt 85  Q
    ||||||||| |||||||||||||||||||||||    
T  10251 aagccaatatcatcaggccaacccaagtgggtt 10219  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 145914 - 145958
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaa 45  Q
    ||||||| ||||||||||||| ||||||||||||| | |||||||    
T  145914 aatcgaatctgagacctcgagaaggagcacactcctaggtcccaa 145958  T

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Target: scaffold0008 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 49381 - 49333
Alignment:
Q  1 aatcgaacctgagacctcgaggaggagcacactcccatgtcccaagcca 49  Q
    |||||||||||| ||||||| ||||||||||||| ||  ||||||||||    
T  49381 aatcgaacctgatacctcgaagaggagcacactctcaaatcccaagcca 49333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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