View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1694_low_4 (Length: 260)
Name: NF1694_low_4
Description: NF1694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1694_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 3945682 - 3945448
Alignment:
| Q |
18 |
actcttgtgatgtgaatcttccattctcaaggttcaatatctctagactctcaacaagttcaggttatgattttcagcctcagatgaatactattggatt |
117 |
Q |
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| T |
3945682 |
actcttgtgatgtgaatcttccattctcaaggttcaatatctctagactctcaacaagttcaggttatgattttcagcctcagatgaatactattggatt |
3945583 |
T |
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| Q |
118 |
aggcttttcatccgggtttacgtccagtgaagccaatgatcataatggttatacaaatggatttacttcaagatatggttcaatctttagttcttcttct |
217 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3945582 |
aggcttttcatctgggtttacgtccagtgaagccaatgatcataatggttatacaaatggatttacttcaagatatggttcaatctttagttcttcttct |
3945483 |
T |
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| Q |
218 |
gtaccaagtaatgcatcagttatgccctctctgct |
252 |
Q |
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|||||||||||||||||||||||||| |||||||| |
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| T |
3945482 |
gtaccaagtaatgcatcagttatgccttctctgct |
3945448 |
T |
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