View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1694_low_6 (Length: 213)
Name: NF1694_low_6
Description: NF1694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1694_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 47486290 - 47486471
Alignment:
| Q |
20 |
acgagtccaaagagaccactccatttgtacagctgtgatgggaagaatggtgtgcgctctccttattgtatctgggctagcttcagatagccctatatac |
119 |
Q |
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| T |
47486290 |
acgagtccaaagagaccactccatttgtacagctgtgatgggatgaatggtgtgcgctctccttattgtatctgggctagcttcagatagccctatatac |
47486389 |
T |
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| Q |
120 |
ttcacttttccttcttccaccaatttcttaagttcacctacctgtaatagaagaaaattgttaacaatgcatctagtataat |
201 |
Q |
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| T |
47486390 |
ttcacttttccttcttccaccaacttcataagttcacctacctgtaatagaagaaacttgttaacaatgcatctagtgtaat |
47486471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 21 - 196
Target Start/End: Original strand, 47473576 - 47473751
Alignment:
| Q |
21 |
cgagtccaaagagaccactccatttgtacagctgtgatgggaagaatggtgtgcgctctccttattgtatctgggctagcttcagatagccctatatact |
120 |
Q |
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| T |
47473576 |
cgagtccaaagagaccactctatttgtacagcagtgatgggatgaacagcatgcgctctccttattgtatcagggctggcttcagatagtccaatatact |
47473675 |
T |
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| Q |
121 |
tcacttttccttcttccaccaatttcttaagttcacctacctgtaatagaagaaaattgttaacaatgcatctagt |
196 |
Q |
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| T |
47473676 |
taacttttccctcttccaccagtttcttaagttcacctacctataacacaacaaacttgttaacaacacatctagt |
47473751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 21 - 196
Target Start/End: Original strand, 47476874 - 47477049
Alignment:
| Q |
21 |
cgagtccaaagagaccactccatttgtacagctgtgatgggaagaatggtgtgcgctctccttattgtatctgggctagcttcagatagccctatatact |
120 |
Q |
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| T |
47476874 |
cgagtccagagagaccactctatttgtaaagctgtgataggatgaacagcatgtgctctccttattgtatcggggctggcttcagatagtccaatatatt |
47476973 |
T |
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| Q |
121 |
tcacttttccttcttccaccaatttcttaagttcacctacctgtaatagaagaaaattgttaacaatgcatctagt |
196 |
Q |
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| T |
47476974 |
taacttttccctcttccaccagtttcttaagttcacctacctatagcacaacaaacttgttaacaacacatctagt |
47477049 |
T |
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