View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16950_high_11 (Length: 410)
Name: NF16950_high_11
Description: NF16950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16950_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 11 - 391
Target Start/End: Complemental strand, 39126010 - 39125631
Alignment:
| Q |
11 |
ttatactacaacatctaaacttagtcaaatcataggttacttcagctctcaaccacactaatctaaatctttcacatcaactcattatggtcaatcttat |
110 |
Q |
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| T |
39126010 |
ttatactacaacatctaaacttagtcaaatcataggttacttcagctctcaaccacactaatctaa-tctttcacatcaactcattatggtcaatcttat |
39125912 |
T |
|
| Q |
111 |
aaaacttcaagtaaaagctataagtatccttcgtctaattctcaacttacaagcattgtatatcgcttttgaatcttacgaccatgtccttaagcttctc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39125911 |
aaaacttcaagtaaaagctataagtatccttcgtctaattctcaacttacaagcattgtatatcgcttttgaatcttacgaccatgtccttaagcttctc |
39125812 |
T |
|
| Q |
211 |
atgccatacatactatttacattaaactttgtcataactgaccgtaaaagattcaataaaatcaatgggataaggatgagatcagttaactctgaaactt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39125811 |
atgccatacatactatttacattaaactttgtcataactgaccgtaaaagattcaataaaatcaatgggataaggatgagatcggttaactctgaaactt |
39125712 |
T |
|
| Q |
311 |
aggtgacgcataagtaaacacacgtacgcacacaaacatgtacaagggatatgcatattttaaaactaaaaacctagtcac |
391 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39125711 |
aggtgacacataagtaaacacacgtacgcacacaaacatgtacaagggatatgcatattttaaaactaaaaacctagtcac |
39125631 |
T |
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