View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16950_high_13 (Length: 373)
Name: NF16950_high_13
Description: NF16950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16950_high_13 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 186837 - 186492
Alignment:
| Q |
18 |
aagaaggataaactacaaatggtgtgttcattccgacatatattaatacaaaacaagtttacatcttttagacattctcagccaatgtctgatcagaaga |
117 |
Q |
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| T |
186837 |
aagaaggataaactacaaatggtgtgttcattccgacatatattaatacaaaacaagtttacatcttttagacattctcagccaatgtctgatcagaaga |
186738 |
T |
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| Q |
118 |
cttagcattatcaaagtcaggagatgtctctaatttgcgctttctttcgggatataacacgtaatgttggatgatgaagaggatgtcaaagaatatagac |
217 |
Q |
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| T |
186737 |
cttagcattatcaaagtcaggagatgtctctaatttgcgctttctttcgggatataacacgtaatgttggatgatgaagaggatgtcaaagaatatagac |
186638 |
T |
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| Q |
218 |
acctgcaatgttaaagaatgtgatgattgatttaatcagtgaaatcattgtaagaaaacaataatatttcatacagtnnnnnnnnttcataaatgtgaaa |
317 |
Q |
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| T |
186637 |
acctgcaatgttaaagaatgtgatgattgatttaatcagtgaaatcattgtaagaaaacaataatatttcatacagtaaaaaaaattcataaatgtgaaa |
186538 |
T |
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| Q |
318 |
taatgatacactgttacataccaaggatagcaatagtttccctatg |
363 |
Q |
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| T |
186537 |
taatgatacactgttacataccaaggatagcaatagtttccctatg |
186492 |
T |
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