View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16950_high_17 (Length: 350)
Name: NF16950_high_17
Description: NF16950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16950_high_17 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 16 - 350
Target Start/End: Original strand, 1599230 - 1599569
Alignment:
| Q |
16 |
atgaaggttgaatgtaggttctgtggtttcaaatcgaataggaattatc---ttttccaaaaccgaactgtacttttcttgtggaaatctccaatgcaag |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1599230 |
atgaaggttgaatgtaggttctgtggtttcaaatcgaataggaattatcatcttttccaaaaccgaactgtacttttcttgtggaaatctccaatgcaag |
1599329 |
T |
|
| Q |
113 |
tggaaatcatcaatacaacaagaaatatttattatacattatctacactttccttgtggttata--ttaatttgttctactctcacttgtggagtgaagt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1599330 |
tggaaatcatcaatacaacaagaaatatttattatacattatctacactttccttgtggttatatattaatttgttctactctcacttgtggagtgaagt |
1599429 |
T |
|
| Q |
211 |
tattattgtaattatgaggttctggtccaaaatttgacttagaaccttacacataactagatatatattttgtttgaatttcaatgattcattaatattg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1599430 |
tattattgtaattatgaggttctggtccaaaatttgacttagaaccttacacataactagatatatattttgtttgaatttcaatgattcattaatattg |
1599529 |
T |
|
| Q |
311 |
ccgttttttaacaaaccatggtatatggaagttaaggaat |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1599530 |
ccgttttttaacaaaccatggtatatggaagttaaggaat |
1599569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 41222434 - 41222373
Alignment:
| Q |
28 |
tgtaggttctgtggtttcaaatcgaataggaattatcttttccaaaaccgaactgtactttt |
89 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| ||| ||||| ||| || || ||||||||| |
|
|
| T |
41222434 |
tgtaggttatgtggtttcaaaccgaataggaactatattttcaaaacccaaattgtactttt |
41222373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University