View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16950_high_19 (Length: 328)
Name: NF16950_high_19
Description: NF16950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16950_high_19 |
 | |
|
| [»] scaffold1408 (1 HSPs) |
| | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 33388433 - 33388743
Alignment:
| Q |
1 |
ctcatgggagtaggcaacatgatgcttgaactgttaaacgctttggaacagccacatatatttagatcttcaagagagctaagaccggatatgttgttgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33388433 |
ctcatgggagtaggcaacatgatgcttgaactgctaaacgctttggaacaaccacatatatttagatcttcaagagagctaagaccggatatgttgttgg |
33388532 |
T |
|
| Q |
101 |
gtatgcttactagatttacgcaaccttccaaattcaagtaaacaagctttcttagaagtccaatagatggatctaactcaacaaggttcgcacataattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33388533 |
gtatgcttactagatttacgcaaccttccaaattcaagtaaacaagctttcttagaagtccaatagatggatctaactcaacaaggttcgcacataattc |
33388632 |
T |
|
| Q |
201 |
caaatttaaccactcaagattcgggaactctccaaaatctactatcttttctagatttctggagtgtcttagatccaatcttctcaaattgggaagatac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33388633 |
caaatttaaccactcaagattcgggaactctccaaaatctactatcttttctagatttctggagtgtcttagatccaatcttctcaaattgggaagatac |
33388732 |
T |
|
| Q |
301 |
tgacatgaaaa |
311 |
Q |
| |
|
||||||||||| |
|
|
| T |
33388733 |
tgacatgaaaa |
33388743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 32 - 311
Target Start/End: Original strand, 33272198 - 33272477
Alignment:
| Q |
32 |
tgttaaacgctttggaacagccacatatatttagatcttcaagagagctaagaccggatatgttgttgggtatgcttactagatttacgcaaccttccaa |
131 |
Q |
| |
|
|||||||| |||| ||||| |||| |||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||| |||| || || |
|
|
| T |
33272198 |
tgttaaacactttagaacaaccacgcatatttagatcttcaagagagcaaagatcaaatatgttgttgggtatgcttactagatttttgcaattttttaa |
33272297 |
T |
|
| Q |
132 |
attcaagtaaacaagctttcttagaagtccaatagatggatctaactcaacaaggttcgcacataattccaaatttaaccactcaagattcgggaactct |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33272298 |
attcaagtaaacaagctttcttagaagtccaatagatggatccaactccacaagatttttacacccttccaaatttaaccactcaagattcgggaactct |
33272397 |
T |
|
| Q |
232 |
ccaaaatctactatcttttctagatttctggagtgtcttagatccaatcttctcaaattgggaagatactgacatgaaaa |
311 |
Q |
| |
|
||||||||||| |||||| ||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33272398 |
ccaaaatctacaatctttaatagttttctggagtaacttagacccaatcttctcaaattgggaagatactgacatgaaaa |
33272477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 32 - 302
Target Start/End: Original strand, 33057957 - 33058227
Alignment:
| Q |
32 |
tgttaaacgctttggaacagccacatatatttagatcttcaagagagctaagaccggatatgttgttgggtatgcttactagatttacgcaaccttccaa |
131 |
Q |
| |
|
||||||| |||||||||||||||| |||||||| | || |||||||||||||||| ||||||||||||||||||| |||||| || |||| ||| | |
|
|
| T |
33057957 |
tgttaaatactttggaacagccacacatatttaggtattgaagagagctaagaccgaatatgttgttgggtatgctaactagacttttgcaatcttttag |
33058056 |
T |
|
| Q |
132 |
attcaagtaaacaagctttcttagaagtccaatagatggatctaactcaacaaggttcgcacataattccaaatttaaccactcaagattcgggaactct |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||| ||| | ||||||||||||||||||| |
|
|
| T |
33058057 |
gttcaagtaaacaagctttcttagaagtccaatagatggatccaactcaacaaggtttatacatccttccaaatctaaacgctcaagattcgggaactct |
33058156 |
T |
|
| Q |
232 |
ccaaaatctactatcttttctagatttctggagtgtcttagatccaatcttctcaaattgggaagatactg |
302 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||| |
|
|
| T |
33058157 |
ccaaaatctattatcttttctagatttctggagtgacgtagatccaatgttctcaaattgggaagatactg |
33058227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 25 - 302
Target Start/End: Original strand, 33410350 - 33410624
Alignment:
| Q |
25 |
cttgaactgttaaacgctttggaacagccacatatatttagatcttcaagagagctaagaccggatatgttgttgggtatgcttactagatttacgcaac |
124 |
Q |
| |
|
|||||| |||||||| |||||||||||||||| |||| ||||||||||||||||||||||| | ||||| |||||||||||||||||| ||||| |||| |
|
|
| T |
33410350 |
cttgaattgttaaacactttggaacagccacacatatatagatcttcaagagagctaagacagaatatgctgttgggtatgcttactaaatttatgcaat |
33410449 |
T |
|
| Q |
125 |
cttccaaattcaagtaaacaagctttcttagaagtccaatagatggatctaactcaacaaggttcgcacataattccaaatttaaccactcaagattcgg |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||| ||||| ||||| || ||||| ||||||||||||| ||||||||||||| |
|
|
| T |
33410450 |
agtccaaattcaagtaaacaagctttcttagaagtccaatcgatgaatccaactccacaagtttttcacatctttccaaatttaacgactcaagattcgg |
33410549 |
T |
|
| Q |
225 |
gaactctccaaaatctactatcttttctagatttctggagtgtcttagatccaatcttctcaaattgggaagatactg |
302 |
Q |
| |
|
||||||||||||||||| ||||||||||| || |||||| |||||||||||| | |||||||||||| |||||| |
|
|
| T |
33410550 |
gaactctccaaaatctattatcttttcta---ttttggagtcacttagatccaatgctttcaaattgggaaaatactg |
33410624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 32 - 302
Target Start/End: Original strand, 33263029 - 33263299
Alignment:
| Q |
32 |
tgttaaacgctttggaacagccacatatatttagatcttcaagagagctaagaccggatatgttgttgggtatgcttactagatttacgcaaccttccaa |
131 |
Q |
| |
|
|||||||| |||||||||||| || |||||||||||||||||||||| |||||| ||||| |||| ||||||||||| || || |||| ||| || |
|
|
| T |
33263029 |
tgttaaacactttggaacagcaactgatatttagatcttcaagagagcccagaccgaatatggtgttcggtatgcttacaaggttatagcaattttctaa |
33263128 |
T |
|
| Q |
132 |
attcaagtaaacaagctttcttagaagtccaatagatggatctaactcaacaaggttcgcacataattccaaatttaaccactcaagattcgggaactct |
231 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || | |||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
33263129 |
attcaagtaaacaagatttcttagaagtccaatagatggatccaactcaacaagatttgtacatccttccaaatttaaccactcaagatttgggaactct |
33263228 |
T |
|
| Q |
232 |
ccaaaatctactatcttttctagatttctggagtgtcttagatccaatcttctcaaattgggaagatactg |
302 |
Q |
| |
|
|||||||||| |||||||||||| | ||||||| |||||||||||| ||||||||||||| |||||||| |
|
|
| T |
33263229 |
ccaaaatctattatcttttctagctcgatggagtgacttagatccaatgttctcaaattgggcagatactg |
33263299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 32 - 302
Target Start/End: Complemental strand, 33644280 - 33644010
Alignment:
| Q |
32 |
tgttaaacgctttggaacagccacatatatttagatcttcaagagagctaagaccggatatgttgttgggtatgcttactagatttacgcaaccttccaa |
131 |
Q |
| |
|
|||||||| |||||||||| |||| | ||||||||||| |||||||||||||| | |||||||||||||||||||||| |||||| | ||| ||| | |
|
|
| T |
33644280 |
tgttaaacactttggaacaaccacccaaatttagatcttgaagagagctaagactgaatatgttgttgggtatgcttaccagattttcacaatcttttac |
33644181 |
T |
|
| Q |
132 |
attcaagtaaacaagctttcttagaagtccaatagatggatctaactcaacaaggttcgcacataattccaaatttaaccactcaagattcgggaactct |
231 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||| ||||| |||||||| | ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33644180 |
attcaagtaaacaagctttcttaaaagtccaatagataaatccaactccacaaggtttacgcatccttccaaatttaaccactcaagattcgggaactct |
33644081 |
T |
|
| Q |
232 |
ccaaaatctactatcttttctagatttctggagtgtcttagatccaatcttctcaaattgggaagatactg |
302 |
Q |
| |
|
|||||||||| |||||||||||| ||||| || | |||| |||||||||||||| ||||||||||||||| |
|
|
| T |
33644080 |
ccaaaatctattatcttttctagctttctagaatcacttaaatccaatcttctcagattgggaagatactg |
33644010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 28869893 - 28869610
Alignment:
| Q |
16 |
aacatgatgcttgaactgttaaacgctttggaacagccacatatatttagatcttcaagagagctaagaccggatatgttgttgggtatgcttactagat |
115 |
Q |
| |
|
|||||||| |||||| |||||||| |||||||||||||| | ||||||||||||||||||||| |||||||| |||||||||| |||| ||||||| || |
|
|
| T |
28869893 |
aacatgatccttgaattgttaaacactttggaacagccagacatatttagatcttcaagagagttaagaccgaatatgttgtt-ggtacacttactatat |
28869795 |
T |
|
| Q |
116 |
ttacgcaaccttccaaattcaagtaaacaagctttcttagaagtccaatagatggatctaactcaacaaggttcgcacataattccaaatttaaccactc |
215 |
Q |
| |
|
| |||||| | ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| || ||| |||| | ||| |
|
|
| T |
28869794 |
tatagcaaccgtttaaattcaagtatacaagctttcttagaagtccaatagatggatccaactcaacaaggtttatacactctttcaactttagcttctc |
28869695 |
T |
|
| Q |
216 |
aagattcgggaactctccaaaatctactatcttttctagatttctggagtgtcttagatccaatcttctcaaattgggaagatac |
300 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||| |||||||| ||||||| |||| |||||||||||||||||||| |
|
|
| T |
28869694 |
aagatttgggaactctccaaaatctattatcttttctagattgctggagtgacttagatgcaatgttctcaaattgggaagatac |
28869610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 58 - 302
Target Start/End: Original strand, 33285966 - 33286210
Alignment:
| Q |
58 |
atatttagatcttcaagagagctaagaccggatatgttgttgggtatgcttactagatttacgcaaccttccaaattcaagtaaacaagctttcttagaa |
157 |
Q |
| |
|
|||| ||||| || ||||||||| |||||| |||||||||||||||||||||| |||||| |||| ||| ||||||||||||||||| |||||||||| |
|
|
| T |
33285966 |
atatatagatatttaagagagcttagaccgaatatgttgttgggtatgcttacaagatttttgcaatcttttaaattcaagtaaacaaggtttcttagaa |
33286065 |
T |
|
| Q |
158 |
gtccaatagatggatctaactcaacaaggttcgcacataattccaaatttaaccactcaagattcgggaactctccaaaatctactatcttttctagatt |
257 |
Q |
| |
|
|||||||||||||||| ||||| | |||| | |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| || |
|
|
| T |
33286066 |
gtccaatagatggatccaactccaaaaggctgatacatccttccaaatttaaccactcaagattcgggaactctccgaaatctactatctttactagttt |
33286165 |
T |
|
| Q |
258 |
tctggagtgtcttagatccaatcttctcaaattgggaagatactg |
302 |
Q |
| |
|
| |||||| || ||||||||||| |||||||||||||||||||| |
|
|
| T |
33286166 |
tttggagtatcgtagatccaatcccctcaaattgggaagatactg |
33286210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 36 - 302
Target Start/End: Complemental strand, 31562497 - 31562231
Alignment:
| Q |
36 |
aaacgctttggaacagccacatatatttagatcttcaagagagctaagaccggatatgttgttgggtatgcttactagatttacgcaaccttccaaattc |
135 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||| | ||| | ||| || || |||||| |
|
|
| T |
31562497 |
aaacactttggaacagccacgcatatttagatcttcaagagagctaagactgaatatgttgttgggtatgctttccagactatagcagccgtctaaattc |
31562398 |
T |
|
| Q |
136 |
aagtaaacaagctttcttagaagtccaatagatggatctaactcaacaaggttcgcacataattccaaatttaaccactcaagattcgggaactctccaa |
235 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||| ||||| |||||||| |||| ||||||| ||| ||||||||||||||||||| |||||| |
|
|
| T |
31562397 |
aagtaagaaagcttttctagaagtccaatagatggatccaactccacaaggtttatacattcttccaaacttagccactcaagattcgggaacgctccaa |
31562298 |
T |
|
| Q |
236 |
aatctactatcttttctagatttctggagtgtcttagatccaatcttctcaaattgggaagatactg |
302 |
Q |
| |
|
|||||| ||||||| | |||||| ||||||| |||||||||||| |||| ||||||||||||||||| |
|
|
| T |
31562297 |
aatctattatctttacaagatttatggagtgacttagatccaattttcttaaattgggaagatactg |
31562231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 34 - 302
Target Start/End: Original strand, 33304880 - 33305148
Alignment:
| Q |
34 |
ttaaacgctttggaacagccacatatatttagatcttcaagagagctaagaccggatatgttgttgggtatgcttactagatttacgcaaccttccaaat |
133 |
Q |
| |
|
|||||| |||||||||| ||| | |||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| ||| | | |||| |
|
|
| T |
33304880 |
ttaaacactttggaacatccatacatatttagatcttcaagagagctaagactgaatatgttattgggtatgcttactagatttttgcattcatataaat |
33304979 |
T |
|
| Q |
134 |
tcaagtaaacaagctttcttagaagtccaatagatggatctaactcaacaaggttcgcacataattccaaatttaaccactcaagattcgggaactctcc |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| ||||||||||| | |||||||||||||||||| || |
|
|
| T |
33304980 |
tcaagtaaacaagctttcttagaagtccaatagatggatccaactccacaaggtttatacatccttccaaatttagcttctcaagattcgggaactcccc |
33305079 |
T |
|
| Q |
234 |
aaaatctactatcttttctagatttctggagtgtcttagatccaatcttctcaaattgggaagatactg |
302 |
Q |
| |
|
|||||||| ||||||| |||| | | |||||||||||||||||| | |||||||||| |||||||| |
|
|
| T |
33305080 |
aaaatctagtatctttactagttctaaggagtgtcttagatccaaatgtttcaaattgggcagatactg |
33305148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 42 - 279
Target Start/End: Original strand, 9167177 - 9167414
Alignment:
| Q |
42 |
tttggaacagccacatatatttagatcttcaagagagctaagaccggatatgttgttgggtatgcttactagatttacgcaaccttccaaattcaagtaa |
141 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||| |||| ||||||| | ||| ||| | |||||||||| |
|
|
| T |
9167177 |
tttggaacagccacacatatttagatctttaagagagctaagaccgaatatgttgttgggtattcttattagatttccacaatcttttacattcaagtaa |
9167276 |
T |
|
| Q |
142 |
acaagctttcttagaagtccaatagatggatctaactcaacaaggttcgcacataattccaaatttaaccactcaagattcgggaactctccaaaatcta |
241 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||| ||||| || ||||| |||||||| |||||||||||||||||| ||| |||||||||||| |
|
|
| T |
9167277 |
acaagctttcttagaagtccaagagatggatccaactccacaagttttacacatccttccaaatctaaccactcaagattcggaaaccctccaaaatcta |
9167376 |
T |
|
| Q |
242 |
ctatcttttctagatttctggagtgtcttagatccaat |
279 |
Q |
| |
|
||||||| |||| || ||||| |||||||||||| |
|
|
| T |
9167377 |
gtatctttactagcactcgggagtaccttagatccaat |
9167414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 36 - 302
Target Start/End: Original strand, 33359118 - 33359382
Alignment:
| Q |
36 |
aaacgctttggaacagccacatatatttagatcttcaagagagctaagaccggatatgttgttgggtatgcttactagatttacgcaaccttccaaattc |
135 |
Q |
| |
|
|||| |||||||||| || || |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| | || ||| || ||| |
|
|
| T |
33359118 |
aaacactttggaacaaccgcacatattttgatcttcaagagagctaagaccaaatatgttgttgggtatgcttactagatttttgtaatcttttaagttc |
33359217 |
T |
|
| Q |
136 |
aagtaaacaagctttcttagaagtccaatagatggatctaactcaacaaggttcgcacataattccaaatttaaccactcaagattcgggaactctccaa |
235 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||| ||||| ||||| || ||||| || |||||||| | |||||||||||||| |||||| |
|
|
| T |
33359218 |
aagtaaacaagcttttttagaagtccaagagatggatccaactccacaagttttacacatcctttcaaatttagcttttcaagattcgggaa--ctccaa |
33359315 |
T |
|
| Q |
236 |
aatctactatcttttctagatttctggagtgtcttagatccaatcttctcaaattgggaagatactg |
302 |
Q |
| |
|
||||| |||||||||||| | | |||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
33359316 |
aatctgttatcttttctagctctttggagttacttagatccaatgttctcaaattgggaagatactg |
33359382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 128 - 302
Target Start/End: Original strand, 33399517 - 33399691
Alignment:
| Q |
128 |
ccaaattcaagtaaacaagctttcttagaagtccaatagatggatctaactcaacaaggttcgcacataattccaaatttaaccactcaagattcgggaa |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
33399517 |
ccaaattcaagtaaacaagctttcttagaagtccaatagatggatccaactcaacaaggttcttacataattccaaatctaaccactcaagatttgggaa |
33399616 |
T |
|
| Q |
228 |
ctctccaaaatctactatcttttctagatttctggagtgtcttagatccaatcttctcaaattgggaagatactg |
302 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | || ||||||||||| ||| ||||||| |||||||||| |
|
|
| T |
33399617 |
ctctccaaaatctattatcttttctagatttattgaacccattagatccaattttcgcaaattgcgaagatactg |
33399691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 27 - 185
Target Start/End: Original strand, 33399344 - 33399502
Alignment:
| Q |
27 |
tgaactgttaaacgctttggaacagccacatatatttagatcttcaagagagctaagaccggatatgttgttgggtatgcttactagatttacgcaacct |
126 |
Q |
| |
|
|||| |||||||| |||||||||||||| |||||||||| |||||||||||||||| || |||||||||||||||||||||| |||||| | ||| || |
|
|
| T |
33399344 |
tgaattgttaaacactttggaacagccattcatatttagatattcaagagagctaagatcgaatatgttgttgggtatgcttaccagattttcacaatct |
33399443 |
T |
|
| Q |
127 |
tccaaattcaagtaaacaagctttcttagaagtccaatagatggatctaactcaacaag |
185 |
Q |
| |
|
| | ||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
33399444 |
tttacattcaagcaaacaagctttcttagaagtccaatagatggatccaactccacaag |
33399502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408 (Bit Score: 141; Significance: 7e-74; HSPs: 1)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 42 - 298
Target Start/End: Original strand, 1057 - 1313
Alignment:
| Q |
42 |
tttggaacagccacatatatttagatcttcaagagagctaagaccggatatgttgttgggtatgcttactagatttacgcaaccttccaaattcaagtaa |
141 |
Q |
| |
|
||||||||| ||| | |||||||||| || |||||||||||||||| |||||||||||||||||||||||||||| ||||| || |||||||||||| |
|
|
| T |
1057 |
tttggaacatccagacatatttagatatttaagagagctaagaccgaatatgttgttgggtatgcttactagattatagcaacgctctaaattcaagtaa |
1156 |
T |
|
| Q |
142 |
acaagctttcttagaagtccaatagatggatctaactcaacaaggttcgcacataattccaaatttaaccactcaagattcgggaactctccaaaatcta |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||| || |||| |||||||||||||||||||||||| || |||| |||||||||| |
|
|
| T |
1157 |
acaagctttcttagaagtccaatagatggatccaactccacaagttttatacatctttccaaatttaaccactcaagattaggaaactgtccaaaatctt |
1256 |
T |
|
| Q |
242 |
ctatcttttctagatttctggagtgtcttagatccaatcttctcaaattgggaagat |
298 |
Q |
| |
|
||||||||||||| || |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1257 |
ctatcttttctagcttcttggagtcacttagatccaatcttctcaaattgggaagat |
1313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 141; Significance: 7e-74; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 42 - 298
Target Start/End: Original strand, 6803 - 7059
Alignment:
| Q |
42 |
tttggaacagccacatatatttagatcttcaagagagctaagaccggatatgttgttgggtatgcttactagatttacgcaaccttccaaattcaagtaa |
141 |
Q |
| |
|
||||||||| ||| | |||||||||| || |||||||||||||||| |||||||||||||||||||||||||||| ||||| || |||||||||||| |
|
|
| T |
6803 |
tttggaacatccagacatatttagatatttaagagagctaagaccgaatatgttgttgggtatgcttactagattatagcaacgctctaaattcaagtaa |
6902 |
T |
|
| Q |
142 |
acaagctttcttagaagtccaatagatggatctaactcaacaaggttcgcacataattccaaatttaaccactcaagattcgggaactctccaaaatcta |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||| || |||| |||||||||||||||||||||||| || |||| |||||||||| |
|
|
| T |
6903 |
acaagctttcttagaagtccaatagatggatccaactccacaagttttatacatctttccaaatttaaccactcaagattaggaaactgtccaaaatctt |
7002 |
T |
|
| Q |
242 |
ctatcttttctagatttctggagtgtcttagatccaatcttctcaaattgggaagat |
298 |
Q |
| |
|
||||||||||||| || |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7003 |
ctatcttttctagcttcttggagtcacttagatccaatcttctcaaattgggaagat |
7059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 58 - 302
Target Start/End: Complemental strand, 17440483 - 17440239
Alignment:
| Q |
58 |
atatttagatcttcaagagagctaagaccggatatgttgttgggtatgcttactagatttacgcaaccttccaaattcaagtaaacaagctttcttagaa |
157 |
Q |
| |
|
|||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||| |||| ||| || ||||||||||||||||||||||||| |
|
|
| T |
17440483 |
atatttagatattcaagagagctaagacagaatatgttgttgggtatgcttactagattatagcaatcttttaagttcaagtaaacaagctttcttagaa |
17440384 |
T |
|
| Q |
158 |
gtccaatagatggatctaactcaacaaggttcgcacataattccaaatttaaccactcaagattcgggaactctccaaaatctactatcttttctagatt |
257 |
Q |
| |
|
||||||| |||||||| || || ||||| | ||||| |||||||||||||||||||||||| ||||||||||||||||| | |||||||||||| || |
|
|
| T |
17440383 |
gtccaattgatggatccaattccacaagtctttcacatccttccaaatttaaccactcaagatttgggaactctccaaaatccattatcttttctagctt |
17440284 |
T |
|
| Q |
258 |
tctggagtgtcttagatccaatcttctcaaattgggaagatactg |
302 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
17440283 |
tctagagtcacttagatccaatcttctcaaattgggaagatactg |
17440239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 32 - 173
Target Start/End: Complemental strand, 31498731 - 31498590
Alignment:
| Q |
32 |
tgttaaacgctttggaacagccacatatatttagatcttcaagagagctaagaccggatatgttgttgggtatgcttactagatttacgcaaccttccaa |
131 |
Q |
| |
|
|||||||| ||| |||||| ||||| ||||||||||||| |||| |||| ||||| |||||||||||||||||||||| ||||| |||| ||| || |
|
|
| T |
31498731 |
tgttaaacacttcggaacacccacacatatttagatctttaagaaagctgagaccaaatatgttgttgggtatgcttacaagattcttgcaatcttttaa |
31498632 |
T |
|
| Q |
132 |
attcaagtaaacaagctttcttagaagtccaatagatggatc |
173 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
31498631 |
attcaaggaaacaatctttcttagaagtccaatagatggatc |
31498590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 56 - 302
Target Start/End: Complemental strand, 31503820 - 31503574
Alignment:
| Q |
56 |
atatatttagatcttcaagagagctaagaccggatatgttgttgggtatgcttactagatttacgcaaccttccaaattcaagtaaacaagctttcttag |
155 |
Q |
| |
|
||||||||||||| |||||| | || ||||| |||||||| || ||| ||||| || || | ||| ||| ||| |||||||||||||||||| |||| |
|
|
| T |
31503820 |
atatatttagatcatcaagacaactgagaccaaatatgttgctgagtaggcttattatatgtttgcagtctttcaagttcaagtaaacaagctttgttag |
31503721 |
T |
|
| Q |
156 |
aagtccaatagatggatctaactcaacaaggttcgcacataattccaaatttaaccactcaagattcgggaactctccaaaatctactatcttttctaga |
255 |
Q |
| |
|
||| |||||||||||||||| || ||||| || |||| ||||| || || || |||||| ||||||||||||||||||| | |||||| || | |
|
|
| T |
31503720 |
aagaccaatagatggatctatctgcacaagttttatacatccttccagatctagccgctcaaggttcgggaactctccaaaatgtggcatctttattaaa |
31503621 |
T |
|
| Q |
256 |
tttctggagtgtcttagatccaatcttctcaaattgggaagatactg |
302 |
Q |
| |
|
||| ||||||| ||||||||||| ||||||||||| | |||||||| |
|
|
| T |
31503620 |
tttttggagtggcttagatccaaatttctcaaattgcgcagatactg |
31503574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 173
Target Start/End: Original strand, 31157605 - 31157746
Alignment:
| Q |
32 |
tgttaaacgctttggaacagccacatatatttagatcttcaagagagctaagaccggatatgttgttgggtatgcttactagatttacgcaaccttccaa |
131 |
Q |
| |
|
|||||||| |||||||||| || | | |||||||| || ||||||||| ||||| ||||||||| |||||||||||||||||| |||| ||| ||| |
|
|
| T |
31157605 |
tgttaaacactttggaacacccggaaagatttagatatttaagagagctgagaccaagtatgttgttcggtatgcttactagatttttgcaatctttcaa |
31157704 |
T |
|
| Q |
132 |
attcaagtaaacaagctttcttagaagtccaatagatggatc |
173 |
Q |
| |
|
|||| | |||||||||||||||||| ||||| |||||||| |
|
|
| T |
31157705 |
tttcatgaaaacaagctttcttagaaccccaattgatggatc |
31157746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 60 - 175
Target Start/End: Original strand, 31027994 - 31028109
Alignment:
| Q |
60 |
atttagatcttcaagagagctaagaccggatatgttgttgggtatgcttactagatttacgcaaccttccaaattcaagtaaacaagctttcttagaagt |
159 |
Q |
| |
|
|||||||| || ||||||| | ||||| |||||||||| |||||||||| ||||||| |||| || ||| |||||| | ||||||||||| ||||| |
|
|
| T |
31027994 |
atttagatatttaagagaggtgagaccaaatatgttgttaggtatgcttattagatttttgcaatttttcaagttcaagaatacaagctttctcagaaga |
31028093 |
T |
|
| Q |
160 |
ccaatagatggatcta |
175 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
31028094 |
ccaatagatggatcta |
31028109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 31526887 - 31526962
Alignment:
| Q |
100 |
ggtatgcttactagatttacgcaaccttccaaattcaagtaaacaagctttcttagaagtccaatagatggatcta |
175 |
Q |
| |
|
|||||| ||||||||||| |||| |||||||||||||||||||||| |||||||||| | |||||||||||||| |
|
|
| T |
31526887 |
ggtatggttactagatttttgcaatcttccaaattcaagtaaacaagttttcttagaacactaatagatggatcta |
31526962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 171
Target Start/End: Original strand, 31148705 - 31148842
Alignment:
| Q |
34 |
ttaaacgctttggaacagccacatatatttagatcttcaagagagctaagaccggatatgttgttgggtatgcttactagatttacgcaaccttccaaat |
133 |
Q |
| |
|
|||||| |||||||||| || | | ||||||| |||||||||||| ||||| |||| || || ||||| ||| ||| ||| |||| ||| ||||| |
|
|
| T |
31148705 |
ttaaacactttggaacaccccgaaagatttagacattcaagagagctgagaccaaatatattttttggtattattattagttttttgcaatctttcaaat |
31148804 |
T |
|
| Q |
134 |
tcaagtaaacaagctttcttagaagtccaatagatgga |
171 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
31148805 |
tcaggtaaacaagctttcttagaaccccaatagatgga |
31148842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 238
Target Start/End: Complemental strand, 31478603 - 31478485
Alignment:
| Q |
120 |
gcaaccttccaaattcaagtaaacaagctttcttagaagtccaatagatggatctaactcaacaaggttcgcacataattccaaatttaaccactcaaga |
219 |
Q |
| |
|
|||| ||| ||||||||||||||||||||| ||| ||| | || ||||||||| |||| ||||| || |||| ||||| || || || ||||||| |
|
|
| T |
31478603 |
gcaatctttcaaattcaagtaaacaagcttcgttaaaagactaagagatggatccaactgcacaagttttatacatccttccagatctagccgctcaaga |
31478504 |
T |
|
| Q |
220 |
ttcgggaactctccaaaat |
238 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
31478503 |
ttcgggaactctccaaaat |
31478485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 31032529 - 31032614
Alignment:
| Q |
32 |
tgttaaacgctttggaacagccacatatatttagatcttcaagagagctaagaccggatatgttgttgggtatgcttactagattt |
117 |
Q |
| |
|
|||||||| |||||||||| || | | |||||||| || ||||||| | ||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
31032529 |
tgttaaacactttggaacacccggaaagatttagatatttaagagaggtgagaccaaatatgttgttgggtatgcttattagattt |
31032614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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