View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16950_high_22 (Length: 303)
Name: NF16950_high_22
Description: NF16950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16950_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 2 - 285
Target Start/End: Original strand, 9630667 - 9630952
Alignment:
| Q |
2 |
gtgtttgtatccgtgcttcatagattttaaaagaagaaaacataattgcttctatagcactctaatatagaagaccaatcaaaaattaaaatttttgatt |
101 |
Q |
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| T |
9630667 |
gtgtctgtatccgtgcttcatagattttaaaagaagaaaacataaatgcttctatagcactctaatatagaagaccaatcaaaaattaaaatttttgatt |
9630766 |
T |
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| Q |
102 |
aaattgcaccaaaccaaattgcaccaaaacaactgaactaaaccataaacttggtttggtttatgaatcatgcaaacccctaactaattgaatttaaaac |
201 |
Q |
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| T |
9630767 |
aaattgcaccaaaccaaattgcaccaaaacaactgaactaaaccataaatttggtttggtttatgaatcatgcaaacccctaactaattgaatttaaaac |
9630866 |
T |
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| Q |
202 |
ttt--nnnnnnnttatttagaatttgaatttgtgacaagttagttaatatgtacttactcttttgacataaaagcaaggcataagt |
285 |
Q |
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| T |
9630867 |
tttaaaaaaaaattatttagaatttgaatttgtgacaagttagttaatatgtacttactcttttgacataaaagcaaggcataagt |
9630952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 7528181 - 7528130
Alignment:
| Q |
132 |
aactgaactaaaccataaacttggtttggtttatgaatcatgcaaaccccta |
183 |
Q |
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| T |
7528181 |
aactgaactaaaccatcagtttggtttggttcatgaatcatgcacaccccta |
7528130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 285
Target Start/End: Complemental strand, 41256857 - 41256824
Alignment:
| Q |
252 |
acttactcttttgacataaaagcaaggcataagt |
285 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
41256857 |
acttacccttttgacataaaagcaaggcataagt |
41256824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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