View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16950_high_24 (Length: 289)
Name: NF16950_high_24
Description: NF16950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16950_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 6396134 - 6396397
Alignment:
| Q |
1 |
aacttatgatgtaatgcaaatcggtaagaagcaaaataattctatctttatttggtacaagggcttattaattttggaagggtaatttttaagcagacac |
100 |
Q |
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| T |
6396134 |
aacttatgatgtaatgcgaatcggtaagaagcaaaataattctatctatatttcgtacaagggcttattaattttggaagggtaatttttaagcagacac |
6396233 |
T |
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| Q |
101 |
tcacattttcaatgtctttttaatgtttcattggttgcgaaataacttnnnnnnncttattcaattaaaaattcaagtatactatatatattatgaggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6396234 |
tcacattttcaatgtctttttaatgtttcattggttgcgaaataacttaaaaaaacttattcaattaaaaattcaagtata--atatatattatgaggaa |
6396331 |
T |
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| Q |
201 |
tactatcaacacacatttcatattcttgttcttggaaaaatattcaaagcctcatttaacattctt |
266 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6396332 |
tactatcaacacacatttcatattcttgttcatggaaaaatattcaaagcctcatttaacattctt |
6396397 |
T |
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