View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16950_high_6 (Length: 459)
Name: NF16950_high_6
Description: NF16950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16950_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 39231183 - 39231628
Alignment:
| Q |
1 |
atagcttcagctaaagaacatgtagcaaatgagtgcaagccagtgcagaatcttttattctcggattgcaaacttggaattaatgatcttccaaaccatg |
100 |
Q |
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| T |
39231183 |
atagcttcagctaaagaacatgtagcaaatgagtgcaagccagtgcagaatcttttattctcggattgcaaacttggaattaatgatcttccaaaccatg |
39231282 |
T |
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| Q |
101 |
tgtatgaagttgattgggatgtaatattggttgacgggcctcgtggggattggccggaagctcccgggagaatgtcggcgatatttacagccggggtgtt |
200 |
Q |
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| T |
39231283 |
tgtatgaagttgattgggatgtaatattggttgacgggcctcgtggggattggccggaagctcccgggagaatgtcggcgatatttaccgccggggtgtt |
39231382 |
T |
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| Q |
201 |
ggctagaagtaagaaaggtggtaacccaaagactcatgtgtttttgcatgatttttctggtgaagttgaacaagtttgtgggaatgagtttttgtgtaaa |
300 |
Q |
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| T |
39231383 |
ggctagaagtaagaaaggtggtaacccaaagactcatgtgtttttgcatgatttttctggtgaagttgaacaagtttgtgggaatgagtttttgtgtaaa |
39231482 |
T |
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| Q |
301 |
gagaatttgttggaagcaagtgagagtatggggcattatgttttggaaaggatgaatgagagcagtgttcagtattgtaaagggtcttcttcatccacat |
400 |
Q |
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| T |
39231483 |
gagaatttgttggaagcaagtgagagtatggggcattatgttttggaaaggatgaatgagagcagtgttcagtattgtaaagggtcttcttcatccacct |
39231582 |
T |
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| Q |
401 |
aatgcatctatgaaatcatagaaatcgcaatgacaccatgattttg |
446 |
Q |
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| T |
39231583 |
aatgcatctatgaaatcatagaaatcgcgatgacaccatgattttg |
39231628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 33371872 - 33371810
Alignment:
| Q |
154 |
ccggaagctcccgggagaatgtcggcgatatttacagccggggtgttggctagaagtaagaaa |
216 |
Q |
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|||| |||||| ||||||||||||||||| |||||||| | ||||||||||| || |||||| |
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| T |
33371872 |
ccggcagctccggggagaatgtcggcgatctttacagcagcagtgttggctaggagcaagaaa |
33371810 |
T |
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