View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16950_high_9 (Length: 437)
Name: NF16950_high_9
Description: NF16950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16950_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Original strand, 45692203 - 45692605
Alignment:
| Q |
18 |
atgaaatgaggagcgagtgggatgcctagtgtgtttaaaaagacacgactcaagcaaaataagattttatcgtacaagtaggtatgtcggtaaaatatga |
117 |
Q |
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| T |
45692203 |
atgaaaggaggagcgagtgggatgcctaatgtgtttaaaaagacatgactgaagcaaaataagattttatcgtacaagtaggtatgtcggtaaaatatga |
45692302 |
T |
|
| Q |
118 |
acacttgtgtatcataaaaatgttgtggtggatgattgtagaaatcatacatgagataagattatgaatgatagc--tagagtaggaatgtcaccaatgc |
215 |
Q |
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| T |
45692303 |
acacttgtgtatcataaaaatgttgtggtggatgattgtagaaatcatacatgagataagattatgaatgatagcaatagagtaggaatgtcaccaatgc |
45692402 |
T |
|
| Q |
216 |
aaaattattgtattcgacgtacgtggtttagaaatttgtggatgacacatgcttattatgtatgtagagaggagagcagtctgattgctacaggtggata |
315 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
45692403 |
aaaattattgtattcgacttacgtggtttagaaatttgtggatgacacatgcttattatgtatgtagagaggagagtagtctgattgctacatgtggata |
45692502 |
T |
|
| Q |
316 |
caaattaaacaaaacataaagagaaactattaaaaatactctttaaaaggccaatgattaggataaattagtgatttaaaagagttaattaaatgtagta |
415 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45692503 |
caaattaaacaaaacat--agagaaactattaaaaatactctttaaaaggccaatgattaggataaattagtgatttaaaagagttaattaaatgtagta |
45692600 |
T |
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| Q |
416 |
ctact |
420 |
Q |
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||||| |
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| T |
45692601 |
ctact |
45692605 |
T |
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