View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16950_low_11 (Length: 415)

Name: NF16950_low_11
Description: NF16950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16950_low_11
NF16950_low_11
[»] chr1 (13 HSPs)
chr1 (7-260)||(9630349-9630603)
chr1 (213-266)||(5944365-5944418)
chr1 (220-268)||(16297223-16297271)
chr1 (220-267)||(17778623-17778670)
chr1 (217-267)||(2218298-2218348)
chr1 (363-393)||(43988730-43988760)
chr1 (218-248)||(46940748-46940778)
chr1 (215-268)||(11412704-11412757)
chr1 (218-267)||(18337399-18337448)
chr1 (215-248)||(47989597-47989630)
chr1 (216-248)||(22515825-22515857)
chr1 (216-248)||(35702540-35702572)
chr1 (220-268)||(42359391-42359439)
[»] chr3 (13 HSPs)
chr3 (40-162)||(41257573-41257695)
chr3 (220-267)||(25775577-25775624)
chr3 (219-268)||(1389907-1389956)
chr3 (218-267)||(27505321-27505370)
chr3 (218-267)||(40052382-40052431)
chr3 (361-393)||(8516884-8516916)
chr3 (361-393)||(32480130-32480162)
chr3 (216-268)||(34185050-34185102)
chr3 (362-393)||(10207723-10207754)
chr3 (364-393)||(8512007-8512036)
chr3 (218-247)||(8903525-8903554)
chr3 (218-267)||(25074865-25074914)
chr3 (364-393)||(32475276-32475305)
[»] scaffold0050 (1 HSPs)
scaffold0050 (221-267)||(70348-70394)
[»] chr6 (7 HSPs)
chr6 (217-267)||(28152168-28152218)
chr6 (361-393)||(5343269-5343301)
chr6 (361-393)||(33330711-33330743)
chr6 (364-393)||(16838536-16838565)
chr6 (364-393)||(33336208-33336237)
chr6 (218-266)||(4878014-4878061)
chr6 (218-250)||(8805524-8805556)
[»] chr2 (4 HSPs)
chr2 (218-268)||(10535685-10535735)
chr2 (218-267)||(26769592-26769641)
chr2 (218-267)||(37419824-37419873)
chr2 (216-268)||(15909568-15909620)
[»] chr5 (8 HSPs)
chr5 (218-267)||(2436981-2437030)
chr5 (361-393)||(33791105-33791137)
chr5 (215-266)||(17123119-17123169)
chr5 (363-393)||(33767970-33768000)
chr5 (364-393)||(2785167-2785196)
chr5 (218-267)||(31084398-31084447)
chr5 (218-267)||(32766872-32766921)
chr5 (361-393)||(31397257-31397289)
[»] scaffold0028 (1 HSPs)
scaffold0028 (361-393)||(149220-149252)
[»] chr8 (3 HSPs)
chr8 (361-393)||(10684529-10684561)
chr8 (361-393)||(35745180-35745212)
chr8 (218-267)||(36450694-36450743)
[»] chr7 (13 HSPs)
chr7 (361-393)||(16884717-16884749)
chr7 (216-248)||(32093952-32093984)
chr7 (214-266)||(40287298-40287350)
chr7 (218-261)||(35862027-35862070)
chr7 (218-268)||(1433528-1433578)
chr7 (363-393)||(16879863-16879893)
chr7 (210-248)||(19213882-19213920)
chr7 (218-267)||(5409771-5409820)
chr7 (364-393)||(24266467-24266496)
chr7 (218-267)||(29763129-29763178)
chr7 (215-267)||(6490786-6490838)
chr7 (218-266)||(21880223-21880271)
chr7 (361-393)||(24261588-24261620)
[»] chr4 (13 HSPs)
chr4 (218-266)||(29205539-29205587)
chr4 (220-267)||(22440559-22440606)
chr4 (218-248)||(12895214-12895244)
chr4 (218-268)||(18513175-18513225)
chr4 (217-267)||(23292925-23292975)
chr4 (218-267)||(19482749-19482798)
chr4 (218-266)||(715545-715593)
chr4 (218-266)||(752871-752919)
chr4 (219-267)||(3947702-3947750)
chr4 (214-246)||(12884343-12884375)
chr4 (218-266)||(16184902-16184950)
chr4 (219-267)||(24544040-24544088)
chr4 (218-250)||(28470452-28470484)
[»] scaffold0777 (1 HSPs)
scaffold0777 (362-393)||(6291-6322)
[»] scaffold0197 (2 HSPs)
scaffold0197 (362-393)||(19429-19460)
scaffold0197 (361-393)||(14574-14606)
[»] scaffold0020 (1 HSPs)
scaffold0020 (216-267)||(135261-135312)
[»] scaffold0009 (1 HSPs)
scaffold0009 (363-393)||(182229-182259)
[»] scaffold0380 (1 HSPs)
scaffold0380 (218-267)||(8671-8720)
[»] scaffold0259 (1 HSPs)
scaffold0259 (364-393)||(2515-2544)
[»] scaffold0027 (1 HSPs)
scaffold0027 (215-248)||(46746-46779)
[»] scaffold0793 (1 HSPs)
scaffold0793 (218-266)||(4821-4869)
[»] scaffold0003 (1 HSPs)
scaffold0003 (207-267)||(241675-241735)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 260
Target Start/End: Original strand, 9630349 - 9630603
Alignment:
Q  7 tgggtagattattctaggacttggtggtaaaggtcttggacttggtacttcattgtaaacttttctttgtttcttggattctaggcattgtagtagttga 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9630349 tgggaagattattctaggacttggtggtaaaggtcttggacttggtacttcattgtaaacttttctttgtttcttggattctaggcattgtagtagttga 9630448  T
Q  107 tgtaactcgttgatgtaatcaattacactttcaactattgatgcttgatctccctaaaccatataggagagtaattagttgcatttttcatac-nnnnnn 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  9630449 tgtaactcgttgatgtaatcaattacactttcaactattgatgcttgatctccctaaaccatataggagagtaattagttgcatttttcatacaaaaaaa 9630548  T
Q  206 nttaattttaaactatgaagcacgaacactcctcggattaggcatatcctcgtgt 260  Q
     |||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  9630549 attaattttaaactatgaagcacgaacactcctcggattaggcgtgtcctcgtgt 9630603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 5944418 - 5944365
Alignment:
Q  213 ttaaactatgaagcacgaacactcctcggattaggcatatcctcgtgtcggaca 266  Q
    |||| ||||||||||||||||||||||||||||||| |||||  ||||||||||    
T  5944418 ttaatctatgaagcacgaacactcctcggattaggcgtatcccggtgtcggaca 5944365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 16297223 - 16297271
Alignment:
Q  220 atgaagcacgaacactcctcggattaggcatatcctcgtgtcggacaca 268  Q
    |||||||||| |||||||||||||||||| | |||| ||||||||||||    
T  16297223 atgaagcacggacactcctcggattaggcgtgtcctggtgtcggacaca 16297271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 17778670 - 17778623
Alignment:
Q  220 atgaagcacgaacactcctcggattaggcatatcctcgtgtcggacac 267  Q
    |||||||||||||||| |||||||||||||| |||  |||||||||||    
T  17778670 atgaagcacgaacacttctcggattaggcatgtcccggtgtcggacac 17778623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 2218348 - 2218298
Alignment:
Q  217 actatgaagcacgaacactcctcggattaggcatatcctcgtgtcggacac 267  Q
    ||||||||||||| ||||||||| |||||||| | |||| |||||||||||    
T  2218348 actatgaagcacggacactcctcagattaggcgtgtcctagtgtcggacac 2218298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 393
Target Start/End: Complemental strand, 43988760 - 43988730
Alignment:
Q  363 ttgttgtgaatccggctcaactaatgaacct 393  Q
    |||||||||||||||||||||||||||||||    
T  43988760 ttgttgtgaatccggctcaactaatgaacct 43988730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 46940748 - 46940778
Alignment:
Q  218 ctatgaagcacgaacactcctcggattaggc 248  Q
    |||||||||||||||||||||||||||||||    
T  46940748 ctatgaagcacgaacactcctcggattaggc 46940778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 11412704 - 11412757
Alignment:
Q  215 aaactatgaagcacgaacactcctcggattaggcatatcctcgtgtcggacaca 268  Q
    |||| |||||||||| |||||||| |||| |||||| |||| ||||||||||||    
T  11412704 aaaccatgaagcacggacactcctaggataaggcatgtcctagtgtcggacaca 11412757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 18337448 - 18337399
Alignment:
Q  218 ctatgaagcacgaacactcctcggattaggcatatcctcgtgtcggacac 267  Q
    |||||||||||| ||||||||||||| |||||| |||  |||||||||||    
T  18337448 ctatgaagcacggacactcctcggatcaggcatgtcccagtgtcggacac 18337399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 47989630 - 47989597
Alignment:
Q  215 aaactatgaagcacgaacactcctcggattaggc 248  Q
    ||||||||||||||| ||||||||||||||||||    
T  47989630 aaactatgaagcacggacactcctcggattaggc 47989597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 22515825 - 22515857
Alignment:
Q  216 aactatgaagcacgaacactcctcggattaggc 248  Q
    |||||||||||||| ||||||||||||||||||    
T  22515825 aactatgaagcacggacactcctcggattaggc 22515857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 35702540 - 35702572
Alignment:
Q  216 aactatgaagcacgaacactcctcggattaggc 248  Q
    |||||||||||||| ||||||||||||||||||    
T  35702540 aactatgaagcacggacactcctcggattaggc 35702572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 42359391 - 42359439
Alignment:
Q  220 atgaagcacgaacactcctcggattaggcatatcctcgtgtcggacaca 268  Q
    |||||||||| |||||||||||||||||| | |||  ||||||||||||    
T  42359391 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacaca 42359439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 41257695 - 41257573
Alignment:
Q  40 tcttggacttggtacttcattgtaaacttttctttgtttcttggattctaggcattgtagtagttgatgtaactcgttgatgtaatcaattacactttca 139  Q
    |||||||||| |||||||| |||| ||||||||||||||||||| ||| |||  ||| |||||||| || |||||  |||||||||||| ||||| | ||    
T  41257695 tcttggacttagtacttcactgtatacttttctttgtttcttggcttcaagggcttggagtagttgttgcaactctgtgatgtaatcaactacacctcca 41257596  T
Q  140 actattgatgcttgatctcccta 162  Q
    | |||||||||||||||||||||    
T  41257595 attattgatgcttgatctcccta 41257573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 25775624 - 25775577
Alignment:
Q  220 atgaagcacgaacactcctcggattaggcatatcctcgtgtcggacac 267  Q
    ||||||||||||||||||||||||||||| | |||| |||||||||||    
T  25775624 atgaagcacgaacactcctcggattaggcgtgtcctggtgtcggacac 25775577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 1389956 - 1389907
Alignment:
Q  219 tatgaagcacgaacactcctcggattaggcatatcctcgtgtcggacaca 268  Q
    ||||||||||| |||||||| ||||||||||| |||| ||||||||||||    
T  1389956 tatgaagcacggacactccttggattaggcatgtcctggtgtcggacaca 1389907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 27505370 - 27505321
Alignment:
Q  218 ctatgaagcacgaacactcctcggattaggcatatcctcgtgtcggacac 267  Q
    |||||||||||| |||||||||||||||||||| |||  |||||||||||    
T  27505370 ctatgaagcacggacactcctcggattaggcatgtcccggtgtcggacac 27505321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 40052431 - 40052382
Alignment:
Q  218 ctatgaagcacgaacactcctcggattaggcatatcctcgtgtcggacac 267  Q
    ||||||||||||||||||||||||||||||| | |||  |||||||||||    
T  40052431 ctatgaagcacgaacactcctcggattaggcgtgtcccggtgtcggacac 40052382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 393
Target Start/End: Original strand, 8516884 - 8516916
Alignment:
Q  361 aattgttgtgaatccggctcaactaatgaacct 393  Q
    |||||||||||||||||||||||||||||||||    
T  8516884 aattgttgtgaatccggctcaactaatgaacct 8516916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 393
Target Start/End: Original strand, 32480130 - 32480162
Alignment:
Q  361 aattgttgtgaatccggctcaactaatgaacct 393  Q
    |||||||||||||||||||||||||||||||||    
T  32480130 aattgttgtgaatccggctcaactaatgaacct 32480162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 34185050 - 34185102
Alignment:
Q  216 aactatgaagcacgaacactcctcggattaggcatatcctcgtgtcggacaca 268  Q
    |||||||||||||| |||||||||||||||||| | |||  ||||||||||||    
T  34185050 aactatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacaca 34185102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 362 - 393
Target Start/End: Original strand, 10207723 - 10207754
Alignment:
Q  362 attgttgtgaatccggctcaactaatgaacct 393  Q
    ||||||||||||||||||||||||||||||||    
T  10207723 attgttgtgaatccggctcaactaatgaacct 10207754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 393
Target Start/End: Original strand, 8512007 - 8512036
Alignment:
Q  364 tgttgtgaatccggctcaactaatgaacct 393  Q
    ||||||||||||||||||||||||||||||    
T  8512007 tgttgtgaatccggctcaactaatgaacct 8512036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 247
Target Start/End: Complemental strand, 8903554 - 8903525
Alignment:
Q  218 ctatgaagcacgaacactcctcggattagg 247  Q
    ||||||||||||||||||||||||||||||    
T  8903554 ctatgaagcacgaacactcctcggattagg 8903525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 25074914 - 25074865
Alignment:
Q  218 ctatgaagcacgaacactcctcggattaggcatatcctcgtgtcggacac 267  Q
    ||||||||||||||||||||||||||||||  | |||  |||||||||||    
T  25074914 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacac 25074865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 393
Target Start/End: Original strand, 32475276 - 32475305
Alignment:
Q  364 tgttgtgaatccggctcaactaatgaacct 393  Q
    ||||||||||||||||||||||||||||||    
T  32475276 tgttgtgaatccggctcaactaatgaacct 32475305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 70394 - 70348
Alignment:
Q  221 tgaagcacgaacactcctcggattaggcatatcctcgtgtcggacac 267  Q
    |||||||||||||||| ||||||||||||| |||| |||||||||||    
T  70394 tgaagcacgaacactcatcggattaggcatgtcctggtgtcggacac 70348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 28152218 - 28152168
Alignment:
Q  217 actatgaagcacgaacactcctcggattaggcatatcctcgtgtcggacac 267  Q
    |||||||||||||||||||||||||||||||| | |||  |||||||||||    
T  28152218 actatgaagcacgaacactcctcggattaggcctgtcccggtgtcggacac 28152168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 393
Target Start/End: Original strand, 5343269 - 5343301
Alignment:
Q  361 aattgttgtgaatccggctcaactaatgaacct 393  Q
    |||||||||||||||||||||||||||||||||    
T  5343269 aattgttgtgaatccggctcaactaatgaacct 5343301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 393
Target Start/End: Complemental strand, 33330743 - 33330711
Alignment:
Q  361 aattgttgtgaatccggctcaactaatgaacct 393  Q
    |||||||||||||||||||||||||||||||||    
T  33330743 aattgttgtgaatccggctcaactaatgaacct 33330711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 393
Target Start/End: Original strand, 16838536 - 16838565
Alignment:
Q  364 tgttgtgaatccggctcaactaatgaacct 393  Q
    ||||||||||||||||||||||||||||||    
T  16838536 tgttgtgaatccggctcaactaatgaacct 16838565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 393
Target Start/End: Complemental strand, 33336237 - 33336208
Alignment:
Q  364 tgttgtgaatccggctcaactaatgaacct 393  Q
    ||||||||||||||||||||||||||||||    
T  33336237 tgttgtgaatccggctcaactaatgaacct 33336208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 4878061 - 4878014
Alignment:
Q  218 ctatgaagcacgaacactcctcggattaggcatatcctcgtgtcggaca 266  Q
    |||||||||||| |||||||||||||||||| | |||| ||||||||||    
T  4878061 ctatgaagcacggacactcctcggattaggcgtgtcct-gtgtcggaca 4878014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 8805524 - 8805556
Alignment:
Q  218 ctatgaagcacgaacactcctcggattaggcat 250  Q
    |||||||||||| ||||||||||||||||||||    
T  8805524 ctatgaagcacggacactcctcggattaggcat 8805556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 10535685 - 10535735
Alignment:
Q  218 ctatgaagcacgaacactcctcggattaggcatatcctcgtgtcggacaca 268  Q
    ||||||||||||||||||||||||||||||| | |||| ||||| ||||||    
T  10535685 ctatgaagcacgaacactcctcggattaggcgtgtcctggtgtcagacaca 10535735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 26769641 - 26769592
Alignment:
Q  218 ctatgaagcacgaacactcctcggattaggcatatcctcgtgtcggacac 267  Q
    |||||||||||| |||||||||||||||||| | |||  |||||||||||    
T  26769641 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtcggacac 26769592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 37419873 - 37419824
Alignment:
Q  218 ctatgaagcacgaacactcctcggattaggcatatcctcgtgtcggacac 267  Q
    |||||||||||| |||||||||||||||||| | |||  |||||||||||    
T  37419873 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 37419824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 15909568 - 15909620
Alignment:
Q  216 aactatgaagcacgaacactcctcggattaggcatatcctcgtgtcggacaca 268  Q
    ||||||||||||||||||||| ||| ||||||| | |||  ||||||||||||    
T  15909568 aactatgaagcacgaacactcttcgaattaggcgtgtccctgtgtcggacaca 15909620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 2437030 - 2436981
Alignment:
Q  218 ctatgaagcacgaacactcctcggattaggcatatcctcgtgtcggacac 267  Q
    ||||||||||||||||||||||||||||||| | || | |||||||||||    
T  2437030 ctatgaagcacgaacactcctcggattaggcgtgtcttggtgtcggacac 2436981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 393
Target Start/End: Original strand, 33791105 - 33791137
Alignment:
Q  361 aattgttgtgaatccggctcaactaatgaacct 393  Q
    |||||||||||||||||||||||||||||||||    
T  33791105 aattgttgtgaatccggctcaactaatgaacct 33791137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 17123169 - 17123119
Alignment:
Q  215 aaactatgaagcacgaacactcctcggattaggcatatcctcgtgtcggaca 266  Q
    ||||||||||||||| |||||||||||||||||| | ||| |||||||||||    
T  17123169 aaactatgaagcacggacactcctcggattaggcgtgtcc-cgtgtcggaca 17123119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 393
Target Start/End: Original strand, 33767970 - 33768000
Alignment:
Q  363 ttgttgtgaatccggctcaactaatgaacct 393  Q
    |||||||||||||||||||||||||||||||    
T  33767970 ttgttgtgaatccggctcaactaatgaacct 33768000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 393
Target Start/End: Original strand, 2785167 - 2785196
Alignment:
Q  364 tgttgtgaatccggctcaactaatgaacct 393  Q
    ||||||||||||||||||||||||||||||    
T  2785167 tgttgtgaatccggctcaactaatgaacct 2785196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 31084447 - 31084398
Alignment:
Q  218 ctatgaagcacgaacactcctcggattaggcatatcctcgtgtcggacac 267  Q
    ||||||| |||| |||||||||||||||||||| |||  |||||||||||    
T  31084447 ctatgaaccacggacactcctcggattaggcatgtcccagtgtcggacac 31084398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 32766872 - 32766921
Alignment:
Q  218 ctatgaagcacgaacactcctcggattaggcatatcctcgtgtcggacac 267  Q
    |||||||||||| ||||||||| |||||| | |||||| |||||||||||    
T  32766872 ctatgaagcacggacactcctcagattagacgtatcctggtgtcggacac 32766921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 393
Target Start/End: Complemental strand, 31397289 - 31397257
Alignment:
Q  361 aattgttgtgaatccggctcaactaatgaacct 393  Q
    ||||||||||||| |||||||||||||||||||    
T  31397289 aattgttgtgaattcggctcaactaatgaacct 31397257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 393
Target Start/End: Complemental strand, 149252 - 149220
Alignment:
Q  361 aattgttgtgaatccggctcaactaatgaacct 393  Q
    |||||||||||||||||||||||||||||||||    
T  149252 aattgttgtgaatccggctcaactaatgaacct 149220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 393
Target Start/End: Complemental strand, 10684561 - 10684529
Alignment:
Q  361 aattgttgtgaatccggctcaactaatgaacct 393  Q
    |||||||||||||||||||||||||||||||||    
T  10684561 aattgttgtgaatccggctcaactaatgaacct 10684529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 393
Target Start/End: Original strand, 35745180 - 35745212
Alignment:
Q  361 aattgttgtgaatccggctcaactaatgaacct 393  Q
    |||||||||||||||||||||||||||||||||    
T  35745180 aattgttgtgaatccggctcaactaatgaacct 35745212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 36450694 - 36450743
Alignment:
Q  218 ctatgaagcacgaacactcctcggattaggcatatcctcgtgtcggacac 267  Q
    |||||||||||  |||||||||||||||||| | |||| |||||||||||    
T  36450694 ctatgaagcacagacactcctcggattaggcgtgtcctggtgtcggacac 36450743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 393
Target Start/End: Original strand, 16884717 - 16884749
Alignment:
Q  361 aattgttgtgaatccggctcaactaatgaacct 393  Q
    |||||||||||||||||||||||||||||||||    
T  16884717 aattgttgtgaatccggctcaactaatgaacct 16884749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 32093952 - 32093984
Alignment:
Q  216 aactatgaagcacgaacactcctcggattaggc 248  Q
    |||||||||||||||||||||||||||||||||    
T  32093952 aactatgaagcacgaacactcctcggattaggc 32093984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 40287298 - 40287350
Alignment:
Q  214 taaactatgaagcacgaacactcctcggattaggcatatcctcgtgtcggaca 266  Q
    ||||||| |||||||| |||||||||||||||||||| |||  ||||||||||    
T  40287298 taaactacgaagcacggacactcctcggattaggcatgtcccggtgtcggaca 40287350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 261
Target Start/End: Complemental strand, 35862070 - 35862027
Alignment:
Q  218 ctatgaagcacgaacactcctcggattaggcatatcctcgtgtc 261  Q
    |||||||||||| |||||||||||||||||| | ||||||||||    
T  35862070 ctatgaagcacggacactcctcggattaggcgtgtcctcgtgtc 35862027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 1433578 - 1433528
Alignment:
Q  218 ctatgaagcacgaacactcctcggattaggcatatcctcgtgtcggacaca 268  Q
    |||||||||||| |||||||||||||||| | | |||| ||||||||||||    
T  1433578 ctatgaagcacggacactcctcggattagacgtgtcctggtgtcggacaca 1433528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 393
Target Start/End: Original strand, 16879863 - 16879893
Alignment:
Q  363 ttgttgtgaatccggctcaactaatgaacct 393  Q
    |||||||||||||||||||||||||||||||    
T  16879863 ttgttgtgaatccggctcaactaatgaacct 16879893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 248
Target Start/End: Complemental strand, 19213920 - 19213882
Alignment:
Q  210 attttaaactatgaagcacgaacactcctcggattaggc 248  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  19213920 attttgaactatgaagcacggacactcctcggattaggc 19213882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 5409771 - 5409820
Alignment:
Q  218 ctatgaagcacgaacactcctcggattaggcatatcctcgtgtcggacac 267  Q
    |||||||||||| |||||||||||||||||| | |||  |||||||||||    
T  5409771 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 5409820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 393
Target Start/End: Complemental strand, 24266496 - 24266467
Alignment:
Q  364 tgttgtgaatccggctcaactaatgaacct 393  Q
    ||||||||||||||||||||||||||||||    
T  24266496 tgttgtgaatccggctcaactaatgaacct 24266467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 29763129 - 29763178
Alignment:
Q  218 ctatgaagcacgaacactcctcggattaggcatatcctcgtgtcggacac 267  Q
    |||||||||||| |||||||||||||||||| | ||||  ||||||||||    
T  29763129 ctatgaagcacggacactcctcggattaggcgtgtcctgatgtcggacac 29763178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 6490838 - 6490786
Alignment:
Q  215 aaactatgaagcacgaacactcctcggattaggcatatcctcgtgtcggacac 267  Q
    ||||||||||||||| ||||||||||||||| || | |||  |||||||||||    
T  6490838 aaactatgaagcacggacactcctcggattaagcgtgtcccggtgtcggacac 6490786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 21880271 - 21880223
Alignment:
Q  218 ctatgaagcacgaacactcctcggattaggcatatcctcgtgtcggaca 266  Q
    |||||||||||| ||||| |||||||||||| | |||| ||||||||||    
T  21880271 ctatgaagcacggacacttctcggattaggcgtgtcctggtgtcggaca 21880223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 393
Target Start/End: Complemental strand, 24261620 - 24261588
Alignment:
Q  361 aattgttgtgaatccggctcaactaatgaacct 393  Q
    ||||||||||||||||| |||||||||||||||    
T  24261620 aattgttgtgaatccggttcaactaatgaacct 24261588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 29205587 - 29205539
Alignment:
Q  218 ctatgaagcacgaacactcctcggattaggcatatcctcgtgtcggaca 266  Q
    ||||||||||||||||||||||||||||||| | |||  ||||||||||    
T  29205587 ctatgaagcacgaacactcctcggattaggcgtgtcccagtgtcggaca 29205539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 22440559 - 22440606
Alignment:
Q  220 atgaagcacgaacactcctcggattaggcatatcctcgtgtcggacac 267  Q
    |||||||||| |||||||||||||||||| | |||| |||||||||||    
T  22440559 atgaagcacggacactcctcggattaggcgtgtcctagtgtcggacac 22440606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 12895214 - 12895244
Alignment:
Q  218 ctatgaagcacgaacactcctcggattaggc 248  Q
    |||||||||||||||||||||||||||||||    
T  12895214 ctatgaagcacgaacactcctcggattaggc 12895244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 18513175 - 18513225
Alignment:
Q  218 ctatgaagcacgaacactcctcggattaggcatatcctcgtgtcggacaca 268  Q
    |||||||||||| ||||||||| |||||||| | |||| ||||||||||||    
T  18513175 ctatgaagcacggacactcctcagattaggcgtgtcctggtgtcggacaca 18513225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 23292925 - 23292975
Alignment:
Q  217 actatgaagcacgaacactcctcggattaggcatatcctcgtgtcggacac 267  Q
    ||||||||||||| |||||||||||||||||| | |||  |||||||||||    
T  23292925 actatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 23292975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 19482798 - 19482749
Alignment:
Q  218 ctatgaagcacgaacactcctcggattaggcatatcctcgtgtcggacac 267  Q
    ||||||||||||||||||||||||||||||  | |||  |||||||||||    
T  19482798 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacac 19482749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 715545 - 715593
Alignment:
Q  218 ctatgaagcacgaacactcctcggattaggcatatcctcgtgtcggaca 266  Q
    |||||||||||| |||||||||||||||||| | |||  ||||||||||    
T  715545 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggaca 715593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 752871 - 752919
Alignment:
Q  218 ctatgaagcacgaacactcctcggattaggcatatcctcgtgtcggaca 266  Q
    |||||||||||| |||||||||||||||||| | |||  ||||||||||    
T  752871 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggaca 752919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 3947702 - 3947750
Alignment:
Q  219 tatgaagcacgaacactcctcggattaggcatatcctcgtgtcggacac 267  Q
    ||||||||||| |||||||||||||||||  | |||| |||||||||||    
T  3947702 tatgaagcacggacactcctcggattaggtgtgtcctggtgtcggacac 3947750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 12884343 - 12884375
Alignment:
Q  214 taaactatgaagcacgaacactcctcggattag 246  Q
    |||||||||||||||| ||||||||||||||||    
T  12884343 taaactatgaagcacggacactcctcggattag 12884375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 16184950 - 16184902
Alignment:
Q  218 ctatgaagcacgaacactcctcggattaggcatatcctcgtgtcggaca 266  Q
    ||||||||||| ||||||||||||||||||| | |||  ||||||||||    
T  16184950 ctatgaagcacaaacactcctcggattaggcgtgtcccagtgtcggaca 16184902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 24544088 - 24544040
Alignment:
Q  219 tatgaagcacgaacactcctcggattaggcatatcctcgtgtcggacac 267  Q
    ||||||||| || ||||||||||||||||||| |||  |||||||||||    
T  24544088 tatgaagcatgagcactcctcggattaggcatgtccatgtgtcggacac 24544040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 28470484 - 28470452
Alignment:
Q  218 ctatgaagcacgaacactcctcggattaggcat 250  Q
    |||||||||||| ||||||||||||||||||||    
T  28470484 ctatgaagcacggacactcctcggattaggcat 28470452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 362 - 393
Target Start/End: Original strand, 6291 - 6322
Alignment:
Q  362 attgttgtgaatccggctcaactaatgaacct 393  Q
    ||||||||||||||||||||||||||||||||    
T  6291 attgttgtgaatccggctcaactaatgaacct 6322  T

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Target: scaffold0197 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 362 - 393
Target Start/End: Complemental strand, 19460 - 19429
Alignment:
Q  362 attgttgtgaatccggctcaactaatgaacct 393  Q
    ||||||||||||||||||||||||||||||||    
T  19460 attgttgtgaatccggctcaactaatgaacct 19429  T

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Target: scaffold0197; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 393
Target Start/End: Complemental strand, 14606 - 14574
Alignment:
Q  361 aattgttgtgaatccggctcaactaatgaacct 393  Q
    ||||||||||||||||| |||||||||||||||    
T  14606 aattgttgtgaatccggttcaactaatgaacct 14574  T

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Target: scaffold0020 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 135261 - 135312
Alignment:
Q  216 aactatgaagcacgaacactcctcggattaggcatatcctcgtgtcggacac 267  Q
    ||||||||||||||||||| |||| |||||||| | |||| |||||||||||    
T  135261 aactatgaagcacgaacacgcctcagattaggcgtgtcctggtgtcggacac 135312  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 393
Target Start/End: Complemental strand, 182259 - 182229
Alignment:
Q  363 ttgttgtgaatccggctcaactaatgaacct 393  Q
    |||||||||||||||||||||||||||||||    
T  182259 ttgttgtgaatccggctcaactaatgaacct 182229  T

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Target: scaffold0380 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 8720 - 8671
Alignment:
Q  218 ctatgaagcacgaacactcctcggattaggcatatcctcgtgtcggacac 267  Q
    |||||||||||| |||||||| ||||||||| |||||  |||||||||||    
T  8720 ctatgaagcacggacactccttggattaggcgtatcccagtgtcggacac 8671  T

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Target: scaffold0259 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 393
Target Start/End: Complemental strand, 2544 - 2515
Alignment:
Q  364 tgttgtgaatccggctcaactaatgaacct 393  Q
    ||||||||||||||||||||||||||||||    
T  2544 tgttgtgaatccggctcaactaatgaacct 2515  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 46779 - 46746
Alignment:
Q  215 aaactatgaagcacgaacactcctcggattaggc 248  Q
    ||||||||||||||| ||||||||||||||||||    
T  46779 aaactatgaagcacggacactcctcggattaggc 46746  T

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Target: scaffold0793 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 4821 - 4869
Alignment:
Q  218 ctatgaagcacgaacactcctcggattaggcatatcctcgtgtcggaca 266  Q
    |||||||||||| |||||||||||||||||| | |||  ||||||||||    
T  4821 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggaca 4869  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 241735 - 241675
Alignment:
Q  207 ttaattttaaactatgaagcacgaacactcctcggattaggcatatcctcgtgtcggacac 267  Q
    |||||| ||| |||||||||||| ||||| |||||||||||| | |||  |||||||||||    
T  241735 ttaattgtaatctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacac 241675  T

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