View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16950_low_15 (Length: 371)
Name: NF16950_low_15
Description: NF16950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16950_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 31937809 - 31938164
Alignment:
| Q |
1 |
aatctatgtgtttgctcctcttcccttatcttatttctttattggattgtttggttgtggttgacattgatattttcaatatacctaaagtatctttaga |
100 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31937809 |
aatctacgtgtttgctcctcttctcttatcttatttctttattggattgtttggttgtggttgacattgatattttcaatatacctaaagtatctttaga |
31937908 |
T |
|
| Q |
101 |
tctattaattatgattaggttgttnnnnnnnnncctttattaactctcctttatcaagtttttagatagacatgagtacgattaataaaagaagacatgg |
200 |
Q |
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| T |
31937909 |
tctattaattatgattaggttgttaaaaaaaa-cctttattaactctcctttatcaagtttttagatagacatgagtacgattaataaaagaagacatgg |
31938007 |
T |
|
| Q |
201 |
ttatggcataaaggatgaccaaaacccaaaataacatacaccaatgaagaataacgaccaaaataggacaactatcctctcattacatgccacaaacaag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31938008 |
ttatggcataaaggatgaccaaaacccaaaataacatgcaccaatgaagaataacgaccaaaataggacaactatcctctcattacatgccacaaacaag |
31938107 |
T |
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| Q |
301 |
aacttccccacgatagaaagagcaaacaatttatcaatcattttattcaataaaagt |
357 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31938108 |
aacttccccacaatagaaagagcaaacaatttatcaatcattttattcaataaaagt |
31938164 |
T |
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