View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16950_low_16 (Length: 355)
Name: NF16950_low_16
Description: NF16950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16950_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 332
Target Start/End: Original strand, 25306530 - 25306849
Alignment:
| Q |
11 |
tcgaagaatatgtgatttgttgtgatgtggataatagatttgttaacaaaatatagtacccgtagagaacatattgatgctacatgtgaacatcgtgaag |
110 |
Q |
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| T |
25306530 |
tcgaaaaagatgtgatttgttgtgatgtggataatagatttgttaacaaaatatagtacccgtagagaacatattgatgctacatgtgaacaccgtgaag |
25306629 |
T |
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| Q |
111 |
taaaagatgagaatttgcatctatcaattatcttgataaaaggaaaatccaaggnnnnnnnncatgttggagtggttagtgtcttgaagagtggttcaat |
210 |
Q |
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| T |
25306630 |
taaaagatgagaatttgcatctataaattatcttgataaaaggaaaatccaaggaaaaaaaacatgttggagtggttagtgtcttgaagagtggttcaat |
25306729 |
T |
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| Q |
211 |
aaaagttataaaacctgccagagagtaatgagaaatgaaccattgnnnnnnnccactgttaagattgattttcatcaaggagcctaagtatgtttataga |
310 |
Q |
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| T |
25306730 |
aaaagttataaaacctgcc--agagtaatgagaaatgaaccattgaaaaaaaccactgttaagattgattttcattaaggagcctaagtatgtttataga |
25306827 |
T |
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| Q |
311 |
ttttcacttatccttgaaaaaa |
332 |
Q |
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| T |
25306828 |
ttttcacttattcttgaaaaaa |
25306849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 28 - 154
Target Start/End: Original strand, 25277867 - 25277996
Alignment:
| Q |
28 |
tgttgtgatgtggataatagatttgttaacaaaatatagtacccgtagagaacatattgatgctacatgtgaacatcgtgaagt-aaaagatgagaattt |
126 |
Q |
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| T |
25277867 |
tgttgtgatgtggattatagattttttaacaaaatatagtacccgtagagaacatatggatgctaaatgtgaacaacgtgaagtaaaaagatgagaattt |
25277966 |
T |
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| Q |
127 |
gcatc--tatcaattatcttgataaaagga |
154 |
Q |
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| T |
25277967 |
gcatctatataaattatcttgataaaagga |
25277996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 173 - 291
Target Start/End: Original strand, 25278084 - 25278200
Alignment:
| Q |
173 |
catgttggagtggttagtgtcttgaagagtggttcaataaaagttataaaacctgccagagagtaatgagaaatgaaccattgnnnnnnnccactgttaa |
272 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||||||||||||| | ||||| |||||||| |||| |||| |||| |||| |
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| T |
25278084 |
catgttggaggggttagtgtcttgaagaggggttcaataaaagttataaaacctttc--agagtgatgagaaaggaactattgaaaaaaagcactcttaa |
25278181 |
T |
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| Q |
273 |
gattgattttcatcaagga |
291 |
Q |
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| T |
25278182 |
gattgattttcattaagga |
25278200 |
T |
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