View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16950_low_17 (Length: 354)
Name: NF16950_low_17
Description: NF16950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16950_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 343
Target Start/End: Original strand, 36950911 - 36951240
Alignment:
| Q |
17 |
gttcatagaaattacta--ctttcctattcattctcctttgtttt-gtattttgttttgaccgtgtattctgttctgtatgcatgtagcaatgtattgtt |
113 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36950911 |
gttcatagaaattactattctttcctattcattctcctttgtttttgtattttgttttgaccgtgtattctgttctgtatgcatgtagcaatgtattgtt |
36951010 |
T |
|
| Q |
114 |
atttaactgtttcttgttaacgtaggtttgaagagaagtcctttacaaatggtgatgtctacattggtaaattcaagggtatacttccccacggcaacgg |
213 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36951011 |
atttaactgtttcctgttaacgtaggtttgaagagaagtcctttacaaatggtgatgtctacattggtaaattcaagggtatacttccccacggcaacgg |
36951110 |
T |
|
| Q |
214 |
gaagtacacatggtcagatggatcggtatatgaaggggattggatagatggaaaaatgacagggaaagggataattatatggccatcaggagcaaagtat |
313 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36951111 |
gaagtacacatggtcagatggatcggtatatgaaggggattggatagatggaaaaatgacagggaaagggatacttatatggccatcaggagcaaagtat |
36951210 |
T |
|
| Q |
314 |
gagggcgaattctccgggagttatcttcat |
343 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
36951211 |
gagggcgaattctccgggagttatcttcat |
36951240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 135 - 281
Target Start/End: Complemental strand, 34534245 - 34534099
Alignment:
| Q |
135 |
gtaggtttgaagagaagtcctttacaaatggtgatgtctacattggtaaattcaagggtatacttccccacggcaacgggaagtacacatggtcagatgg |
234 |
Q |
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|||| ||| |||||||||| ||| ||| || ||||||||||||||||| ||||||||| |||| || ||||||||||||||||||||||||||||| |
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| T |
34534245 |
gtagttttaaagagaagtcatttttaaacggggatgtctacattggtaacttcaagggtgaactttgtcatggcaacgggaagtacacatggtcagatgg |
34534146 |
T |
|
| Q |
235 |
atcggtatatgaaggggattggatagatggaaaaatgacagggaaag |
281 |
Q |
| |
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| | ||||||| || |||||| | |||||| ||||||||||||||| |
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| T |
34534145 |
aacaatatatgagggcgattgggttgatggacaaatgacagggaaag |
34534099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 285
Target Start/End: Complemental strand, 34916799 - 34916658
Alignment:
| Q |
144 |
aagagaagtcctttacaaatggtgatgtctacattggtaaattcaagggtatacttccccacggcaacgggaagtacacatggtcagatggatcggtata |
243 |
Q |
| |
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|||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||| ||| |||| || |||||||||||| || ||||| | |||| |
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| T |
34916799 |
aagagaagtccttttcaaatggggatgtctacattggtaaattcaagggtgaacttctccatggcatgggaaagtacacatggacaaatggaacaatata |
34916700 |
T |
|
| Q |
244 |
tgaaggggattggatagatggaaaaatgacagggaaagggat |
285 |
Q |
| |
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|| || || ||| | ||||||||| |||||||||||||||| |
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| T |
34916699 |
cgagggtgactgggttgatggaaaagtgacagggaaagggat |
34916658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 326
Target Start/End: Complemental strand, 34548908 - 34548819
Alignment:
| Q |
240 |
tatatgaaggggattggatagatggaaaaatgacagggaaagggataattata---tggccatcaggagcaaagtatgagggcgaattct |
326 |
Q |
| |
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|||||||||| |||||| | ||||||||||||||||||||||| |||| ||| ||||||||| || ||||||||||||| ||||||| |
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| T |
34548908 |
tatatgaaggcgattgggttgatggaaaaatgacagggaaaggactaatgatatggtggccatcaagaacaaagtatgagggtgaattct |
34548819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 283
Target Start/End: Complemental strand, 34545076 - 34544940
Alignment:
| Q |
144 |
aagagaagtcctttacaaatggtgatgtctacattggtaaattcaagggtatacttccccacggcaacgggaagtacacatggtcagatggatcggtata |
243 |
Q |
| |
|
|||||||||||||| ||||||| | | |||||||||||||||| |||| | |||| || |||| ||| |||||||||||| || ||||| | |||| |
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| T |
34545076 |
aagagaagtccttttcaaatggggtt---tacattggtaaattcaggggtgaaattcctcatggcatcggaaagtacacatggacaaatggaacaatata |
34544980 |
T |
|
| Q |
244 |
tgaaggggattggatagatggaaaaatgacagggaaaggg |
283 |
Q |
| |
|
|| || || ||| | |||||||||||||||||||||||| |
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| T |
34544979 |
cgagggtgactgggttgatggaaaaatgacagggaaaggg |
34544940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 38632290 - 38632358
Alignment:
| Q |
169 |
tgtctacattggtaaattcaagggtatacttccccacggcaacgggaagtacacatggtcagatggatc |
237 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| || |||| ||| |||| || ||||||||||||||| |
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| T |
38632290 |
tgtctacattggtaacttcaagggtgaacttcgtcatggcagcggaaagtgcaaatggtcagatggatc |
38632358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 308
Target Start/End: Original strand, 32713989 - 32714163
Alignment:
| Q |
134 |
cgtaggtttgaagagaagtcctttacaaatggtgatgtctacattggtaaattcaagggtatacttccccacggcaacgggaagtacacatggtcagatg |
233 |
Q |
| |
|
||||||||| ||||||||| ||| ||||||| ||||||||||||||| ||||||| | || | || ||||| || ||||||||||||||| ||| |
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| T |
32713989 |
cgtaggtttaaagagaagtatttttcaaatggggatgtctacattggttttgtcaagggaaaacgtaagcatggcaagggaaagtacacatggtcaaatg |
32714088 |
T |
|
| Q |
234 |
gatcggtatatgaaggggattggatagatggaaaaatgacagggaaagggataattatatggccatcaggagcaa |
308 |
Q |
| |
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|| | ||||||| || |||||| | |||||||||| ||||||||||||| || |||| ||||||||||||| |
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| T |
32714089 |
gaacaatatatgagggtgattgggttgatggaaaaaggacagggaaagggcggatcatatatccatcaggagcaa |
32714163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 308
Target Start/End: Original strand, 32716403 - 32716577
Alignment:
| Q |
134 |
cgtaggtttgaagagaagtcctttacaaatggtgatgtctacattggtaaattcaagggtatacttccccacggcaacgggaagtacacatggtcagatg |
233 |
Q |
| |
|
||||||||| ||||||||| ||| ||||||| ||||||||||||||| ||||||| | || | || ||||| || ||||||||||||||| ||| |
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| T |
32716403 |
cgtaggtttaaagagaagtatttttcaaatggggatgtctacattggttttgtcaagggaaaacgtaagcatggcaagggaaagtacacatggtcaaatg |
32716502 |
T |
|
| Q |
234 |
gatcggtatatgaaggggattggatagatggaaaaatgacagggaaagggataattatatggccatcaggagcaa |
308 |
Q |
| |
|
|| | ||||||| || |||||| | |||||||||| ||||||||||||| || |||| ||||||||||||| |
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|
| T |
32716503 |
gaacaatatatgagggtgattgggttgatggaaaaaggacagggaaagggcggatcatatatccatcaggagcaa |
32716577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 282
Target Start/End: Complemental strand, 7046998 - 7046885
Alignment:
| Q |
169 |
tgtctacattggtaaattcaagggtatacttccccacggcaacgggaagtacacatggtcagatggatcggtatatgaaggggattggatagatggaaaa |
268 |
Q |
| |
|
||||||||||| ||| || ||||| ||||| || |||||||| || |||||||||||||||||||| ||||||| || |||||||| ||||| | |
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| T |
7046998 |
tgtctacattgataactttaaggggcaacttcatcatggcaacggaaactacacatggtcagatggatcaatatatgagggagattggattgatggggag |
7046899 |
T |
|
| Q |
269 |
atgacagggaaagg |
282 |
Q |
| |
|
|||||||||||||| |
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|
| T |
7046898 |
atgacagggaaagg |
7046885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 246
Target Start/End: Original strand, 44474038 - 44474177
Alignment:
| Q |
108 |
attgttatttaactgtttcttgttaac-gtaggtttgaagagaagtcctttacaaatggtgatgtctacattggtaaattcaagggtatacttccccacg |
206 |
Q |
| |
|
||||| |||| | |||||||||| ||| ||||||||||||||| || | | ||| || ||||||||| |||||| ||||||| | |||||| | | |
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|
| T |
44474038 |
attgtaatttcattgtttcttgtaaactgtaggtttgaagagacgttcaattcaagaggggatgtctacgttggtatcttcaaggatggacttcctgatg |
44474137 |
T |
|
| Q |
207 |
gcaacgggaagtacacatggtcagatggatcggtatatga |
246 |
Q |
| |
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||||||| ||||||||||||||||||||||| ||||||| |
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|
| T |
44474138 |
gcaacggaaagtacacatggtcagatggatcaatatatga |
44474177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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