View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16950_low_19 (Length: 331)

Name: NF16950_low_19
Description: NF16950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16950_low_19
NF16950_low_19
[»] chr4 (27 HSPs)
chr4 (15-314)||(54639640-54639937)
chr4 (22-169)||(21240125-21240275)
chr4 (50-165)||(3775343-3775458)
chr4 (23-173)||(24157730-24157882)
chr4 (53-139)||(2322587-2322673)
chr4 (48-173)||(26009670-26009795)
chr4 (67-210)||(23568002-23568145)
chr4 (64-138)||(22478036-22478110)
chr4 (56-173)||(18915531-18915647)
chr4 (32-173)||(35911723-35911863)
chr4 (74-139)||(37626970-37627035)
chr4 (81-165)||(51834778-51834862)
chr4 (67-165)||(5497749-5497847)
chr4 (56-173)||(11123458-11123574)
chr4 (63-140)||(52820594-52820671)
chr4 (53-132)||(48051710-48051789)
chr4 (107-173)||(42098916-42098982)
chr4 (23-162)||(4068310-4068449)
chr4 (98-141)||(6336332-6336375)
chr4 (50-105)||(52378430-52378485)
chr4 (57-186)||(24943552-24943682)
chr4 (94-172)||(25098930-25099008)
chr4 (64-170)||(39753935-39754046)
chr4 (53-173)||(8753005-8753126)
chr4 (48-172)||(50890686-50890811)
chr4 (116-168)||(36363572-36363624)
chr4 (94-138)||(56128625-56128669)
[»] chr8 (24 HSPs)
chr8 (23-206)||(32615798-32615981)
chr8 (66-207)||(42964747-42964887)
chr8 (24-207)||(7859087-7859270)
chr8 (61-206)||(41235831-41235971)
chr8 (81-182)||(29912125-29912226)
chr8 (53-208)||(13244631-13244786)
chr8 (53-208)||(13521702-13521857)
chr8 (53-206)||(13611237-13611390)
chr8 (107-173)||(41570037-41570103)
chr8 (76-166)||(24585828-24585918)
chr8 (51-173)||(28626632-28626754)
chr8 (27-121)||(31331327-31331423)
chr8 (108-183)||(41291488-41291563)
chr8 (98-172)||(26738514-26738588)
chr8 (71-128)||(6322850-6322907)
chr8 (96-173)||(10409678-10409755)
chr8 (53-165)||(34085323-34085434)
chr8 (53-140)||(34186976-34187060)
chr8 (98-172)||(14548201-14548278)
chr8 (61-128)||(44812777-44812844)
chr8 (53-138)||(1883849-1883935)
chr8 (50-172)||(5984172-5984291)
chr8 (108-165)||(41657641-41657698)
chr8 (92-172)||(38813718-38813798)
[»] chr6 (11 HSPs)
chr6 (21-206)||(30326636-30326823)
chr6 (22-173)||(342943-343095)
chr6 (74-205)||(24396789-24396920)
chr6 (74-188)||(2248691-2248806)
chr6 (53-165)||(31597517-31597630)
chr6 (48-203)||(6067501-6067656)
chr6 (32-140)||(2801303-2801413)
chr6 (53-207)||(2817198-2817354)
chr6 (98-183)||(9049972-9050057)
chr6 (25-71)||(23578864-23578910)
chr6 (98-171)||(24824943-24825016)
[»] chr2 (23 HSPs)
chr2 (48-201)||(11074493-11074646)
chr2 (48-173)||(37426512-37426637)
chr2 (48-173)||(40141939-40142064)
chr2 (23-145)||(1944763-1944886)
chr2 (53-165)||(3954427-3954539)
chr2 (56-168)||(16011796-16011908)
chr2 (66-142)||(31549744-31549820)
chr2 (32-139)||(12204661-12204768)
chr2 (66-173)||(19204373-19204480)
chr2 (22-172)||(752116-752266)
chr2 (53-209)||(12880044-12880200)
chr2 (68-140)||(19341094-19341166)
chr2 (98-177)||(8741018-8741096)
chr2 (74-124)||(38788767-38788817)
chr2 (29-138)||(39575446-39575555)
chr2 (58-105)||(9548400-9548447)
chr2 (26-173)||(31663572-31663719)
chr2 (98-205)||(40083423-40083530)
chr2 (30-172)||(1852830-1852972)
chr2 (116-162)||(37038491-37038537)
chr2 (53-155)||(44949234-44949336)
chr2 (51-140)||(36626164-36626252)
chr2 (61-165)||(34335021-34335124)
[»] chr5 (13 HSPs)
chr5 (22-173)||(8611723-8611875)
chr5 (48-188)||(844738-844878)
chr5 (74-155)||(20975555-20975636)
chr5 (53-152)||(41360883-41360983)
chr5 (56-173)||(13203125-13203242)
chr5 (78-173)||(19608771-19608866)
chr5 (49-172)||(41807219-41807341)
chr5 (20-112)||(950615-950707)
chr5 (108-164)||(6562633-6562689)
chr5 (66-138)||(40323888-40323962)
chr5 (100-207)||(41174346-41174453)
chr5 (21-158)||(42035749-42035887)
chr5 (74-165)||(31409876-31409964)
[»] chr1 (30 HSPs)
chr1 (48-184)||(52698417-52698553)
chr1 (23-194)||(7444889-7445063)
chr1 (75-209)||(44697990-44698124)
chr1 (21-142)||(9433820-9433932)
chr1 (23-173)||(11451858-11452001)
chr1 (74-173)||(27262760-27262859)
chr1 (22-218)||(47018932-47019128)
chr1 (53-168)||(32003013-32003128)
chr1 (53-140)||(47235506-47235593)
chr1 (107-173)||(31963041-31963107)
chr1 (53-154)||(24980817-24980918)
chr1 (53-154)||(24989575-24989676)
chr1 (50-206)||(42592675-42592831)
chr1 (54-173)||(49805964-49806084)
chr1 (50-203)||(42479439-42479592)
chr1 (53-159)||(9682246-9682351)
chr1 (75-141)||(26478062-26478128)
chr1 (100-177)||(1862121-1862198)
chr1 (52-173)||(44529252-44529373)
chr1 (108-164)||(32745671-32745727)
chr1 (92-208)||(48902883-48902999)
chr1 (48-151)||(39527014-39527117)
chr1 (56-123)||(46299504-46299570)
chr1 (74-128)||(26816574-26816628)
chr1 (21-186)||(36995196-36995362)
chr1 (100-177)||(1871297-1871374)
chr1 (52-164)||(5173042-5173154)
chr1 (53-177)||(22156756-22156883)
chr1 (94-138)||(37599667-37599711)
chr1 (73-145)||(41884985-41885057)
[»] chr3 (25 HSPs)
chr3 (23-210)||(15496102-15496289)
chr3 (66-208)||(31732083-31732225)
chr3 (57-173)||(34600776-34600893)
chr3 (22-115)||(27473650-27473743)
chr3 (53-173)||(45076719-45076840)
chr3 (54-173)||(35365191-35365310)
chr3 (53-140)||(26554199-26554284)
chr3 (68-203)||(54457440-54457575)
chr3 (74-207)||(43767251-43767384)
chr3 (26-128)||(24487775-24487878)
chr3 (29-172)||(29577243-29577386)
chr3 (53-170)||(23512734-23512851)
chr3 (52-140)||(25985399-25985487)
chr3 (98-173)||(35220433-35220508)
chr3 (74-173)||(42461318-42461417)
chr3 (118-184)||(31596224-31596290)
chr3 (53-173)||(44765100-44765220)
chr3 (78-176)||(47077651-47077751)
chr3 (29-210)||(50173317-50173498)
chr3 (48-128)||(19791023-19791103)
chr3 (92-170)||(31375499-31375577)
chr3 (87-173)||(51723218-51723304)
chr3 (24-173)||(15985238-15985387)
chr3 (25-90)||(16053325-16053390)
chr3 (25-125)||(16041385-16041484)
[»] chr7 (24 HSPs)
chr7 (48-165)||(34004756-34004873)
chr7 (48-155)||(24423447-24423554)
chr7 (47-128)||(30424883-30424964)
chr7 (53-177)||(6707589-6707712)
chr7 (74-174)||(11663021-11663120)
chr7 (50-155)||(7711891-7711996)
chr7 (50-119)||(36586824-36586893)
chr7 (29-208)||(28197984-28198163)
chr7 (75-173)||(3237308-3237406)
chr7 (53-170)||(8902958-8903076)
chr7 (75-168)||(39258863-39258955)
chr7 (66-158)||(43638968-43639061)
chr7 (52-122)||(22329570-22329640)
chr7 (52-128)||(47188459-47188535)
chr7 (98-173)||(7399828-7399903)
chr7 (117-173)||(1799537-1799593)
chr7 (22-128)||(7711617-7711720)
chr7 (53-140)||(35116887-35116974)
chr7 (24-85)||(32064205-32064266)
chr7 (21-85)||(7728540-7728604)
chr7 (108-156)||(7936027-7936075)
chr7 (53-125)||(12837898-12837970)
chr7 (25-85)||(46096818-46096878)
chr7 (48-172)||(49119559-49119683)
[»] scaffold0074 (1 HSPs)
scaffold0074 (114-193)||(29749-29828)


Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 15 - 314
Target Start/End: Original strand, 54639640 - 54639937
Alignment:
Q  15 tatagaaagggtcttgctaacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttga 114  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54639640 tatagaaagggtcttgctaacaagtgcccttatggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttga 54639739  T
Q  115 tgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttataaagggcccttagggaacttgctagcatttcccttataaaa 214  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54639740 tgtttcaatttgttcaatacacaaatcccaaaataaaatttctactttaaacttcttataaagggcccttagggaacttgctagcatttcccttataaaa 54639839  T
Q  215 aatagnnnnnnngggaaaacagaaatattagaactcatttatttaaattctttcttcagtaaatttgtggctacataaaattaattcttaaggcaaaacc 314  Q
    |||||       ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54639840 aatagtttttttgggaaaacagaaatattagaactcatttatttaaat--tttcttcagtaaatttgtggctacataaaattaattcttaaggcaaaacc 54639937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 22 - 169
Target Start/End: Complemental strand, 21240275 - 21240125
Alignment:
Q  22 agggtcttgctaacaagtgccttta---tggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtt 118  Q
    ||||||||||||||||||| | |||   || || ||||||| |||||||||||| |||||||||||| |||||| ||||||||||||| ||||| || ||    
T  21240275 agggtcttgctaacaagtgtccttaagatgacacttgttaaggatttaaaaatggaaacaattgataactttcacgtagaaaaagttgttttttaatatt 21240176  T
Q  119 tcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttc 169  Q
    |||||||||| |||| |||||||||||||||| ||||||||||| ||||||    
T  21240175 tcaatgtgttgaatatacaaatcccaaaataatatttctacttttaacttc 21240125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 50 - 165
Target Start/End: Complemental strand, 3775458 - 3775343
Alignment:
Q  50 catttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaata 149  Q
    |||||||||| |||||||||| ||||||||||||||| ||| |||||||||| |||| ||||||||||||||||||||| |||| ||||||  ||| |||    
T  3775458 catttgttaaggatttaaaaaagaaaacaattgatagtttttatgtagaaaatgttgttttttgatgtttcaatgtgtttaatatacaaattacaagata 3775359  T
Q  150 aaatttctactttaaa 165  Q
    |||||| ||| |||||    
T  3775358 aaatttttacattaaa 3775343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 173
Target Start/End: Original strand, 24157730 - 24157882
Alignment:
Q  23 gggtcttgctaacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaa-aaagttgctttttgatgtttca 121  Q
    ||||| || ||||||||| |||| || || |||||||  ||  |||||| |||| |||||||| |||||||  |||| |||||||||||||||||||| |    
T  24157730 gggtcctgttaacaagtgtctttgtgacacttgttaagaatccaaaaataaaaataattgataactttcat--agaataaagttgctttttgatgtttta 24157827  T
Q  122 atgtgttcaatacacaaatcccaaaataaaattt---ctactttaaacttcttat 173  Q
    ||||||| ||||||||| | | ||||||||||||   ||||||||||||||||||    
T  24157828 atgtgttgaatacacaagttcaaaaataaaatttctactactttaaacttcttat 24157882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 53 - 139
Target Start/End: Original strand, 2322587 - 2322673
Alignment:
Q  53 ttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaa 139  Q
    |||||||||||||||||||||||||| ||||||  | ||||||||||||| ||| ||||||||||||||| ||| | |||| |||||    
T  2322587 ttgttaaagatttaaaaatgaaaacatttgataattatcatgtagaaaaaattgatttttgatgtttcaacgtggtgaatatacaaa 2322673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 173
Target Start/End: Original strand, 26009670 - 26009795
Alignment:
Q  48 ggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaa 147  Q
    |||||||||||| ||||  |||||  ||| ||||| || |||| ||||| ||||||||||||||| || ||||||| | || ||||||||||| |||| |    
T  26009670 ggcatttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatattttgaatacacaaattccaaga 26009769  T
Q  148 taaaatttctactttaaacttcttat 173  Q
    |||| ||| ||||||||| |||||||    
T  26009770 taaagtttttactttaaatttcttat 26009795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 67 - 210
Target Start/End: Original strand, 23568002 - 23568145
Alignment:
Q  67 aaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaac 166  Q
    ||||| |||| |||||||| |||| || ||||||| ||| ||||||||| ||||||||| || |||| ||||||  ||| ||||| |||| | || ||||    
T  23568002 aaaataaaaataattgataacttttatatagaaaatgttactttttgatttttcaatgtattgaatatacaaatttcaagataaagtttccatttaaaac 23568101  T
Q  167 ttcttataaagggcccttagggaacttgctagcatttcccttat 210  Q
    ||||||| ||| |||| ||||  ||||| || ||||||||||||    
T  23568102 ttcttatcaagtgcccctaggacacttgttaacatttcccttat 23568145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 22478110 - 22478036
Alignment:
Q  64 ttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaa 138  Q
    ||||||||| |||||||||||| |||| ||| ||||||||||| |||||| | |||||||||||| |||||||||    
T  22478110 ttaaaaatggaaacaattgataacttttatggagaaaaagttggtttttgttatttcaatgtgttgaatacacaa 22478036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 56 - 173
Target Start/End: Complemental strand, 18915647 - 18915531
Alignment:
Q  56 ttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaattt 155  Q
    |||||||||  |||||| ||||||||||||  ||| ||||| ||||| ||| ||||||||||||   | |||| |||||| |||||| ||||||||||||    
T  18915647 ttaaagattataaaatggaaacaattgataatttttatgtaaaaaaaattgttttttgatgttttt-tatgttgaatacataaatcctaaaataaaattt 18915549  T
Q  156 ctactttaaacttcttat 173  Q
    ||| |||||| |||||||    
T  18915548 ctaatttaaagttcttat 18915531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 32 - 173
Target Start/End: Original strand, 35911723 - 35911863
Alignment:
Q  32 taacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaa 131  Q
    |||||| |||| |||  ||||||||||| ||| ||| ||| |||| |||||| | |||| ||||| ||||| || |||||| ||||||| ||||||| ||    
T  35911723 taacaattgcccttaatgcatttgttaaggatataataataaaaataattgaaa-cttttatgtataaaaaattactttttaatgtttctatgtgttgaa 35911821  T
Q  132 tacacaaatcccaaaataaaatttctactttaaacttcttat 173  Q
    |||| ||||  ||| | || ||||||||||||||||||||||    
T  35911822 tacataaatttcaataaaagatttctactttaaacttcttat 35911863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 74 - 139
Target Start/End: Complemental strand, 37627035 - 37626970
Alignment:
Q  74 aaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaa 139  Q
    |||||||||||| |||| |||||||||||||| |||||| |||||| |||||||| ||||||||||    
T  37627035 aaacaattgataacttttatgtagaaaaagttactttttaatgtttaaatgtgttgaatacacaaa 37626970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 51834778 - 51834862
Alignment:
Q  81 tgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaa 165  Q
    ||||| |||||||||||| |||||||||||||| |||||||| | ||| |||||||||||  ||| ||||||||| | |||||||    
T  51834778 tgataactttcatgtagataaagttgctttttggtgtttcaacgagttgaatacacaaatttcaagataaaatttttgctttaaa 51834862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 165
Target Start/End: Complemental strand, 5497847 - 5497749
Alignment:
Q  67 aaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaa 165  Q
    |||||| ||||| |||||| |||| |||||||||||||| ||||||||||||||| ||| || |||||| ||||   || |||||||||| | ||||||    
T  5497847 aaaatggaaacagttgataacttttatgtagaaaaagttactttttgatgtttcattgtattaaatacataaattttaagataaaatttccattttaaa 5497749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 173
Target Start/End: Complemental strand, 11123574 - 11123458
Alignment:
Q  56 ttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaattt 155  Q
    |||||||||||||| || |||||||| |||  ||  ||||||||||  ||| |||||||||||| ||| |||| ||||||||||| | |  |||||||||    
T  11123574 ttaaagatttaaaa-tggaaacaattaataatttctatgtagaaaagattgatttttgatgttttaatatgttgaatacacaaattctatgataaaattt 11123476  T
Q  156 ctactttaaacttcttat 173  Q
      ||||||||||||||||    
T  11123475 tcactttaaacttcttat 11123458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 52820594 - 52820671
Alignment:
Q  63 tttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaat 140  Q
    ||||||||||||||||||| ||| |||| ||||| ||||| ||| ||||||||| |||||| |||| || ||||||||    
T  52820594 tttaaaaatgaaaacaattaataacttttatgtataaaaaattgttttttgatgcttcaatatgttgaacacacaaat 52820671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 48051789 - 48051710
Alignment:
Q  53 ttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaat 132  Q
    ||||||| |||| ||||||  ||| ||||||||  ||| |||||||||||||| ||||||| ||||||||||| ||||||    
T  48051789 ttgttaaggattcaaaaatagaaataattgataaattttatgtagaaaaagttactttttgttgtttcaatgtcttcaat 48051710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 42098982 - 42098916
Alignment:
Q  107 ctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttat 173  Q
    ||||||||||||||||| | || |||| |||||||| ||||||||||||  | ||||||||||||||    
T  42098982 ctttttgatgtttcaatatattgaatatacaaatcctaaaataaaattttcattttaaacttcttat 42098916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 4068449 - 4068310
Alignment:
Q  23 gggtcttgctaacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaa 122  Q
    |||| ||||||||||||||| ||| |||| | ||||| |||| |||||   ||||||||| ||  ||  |||||||||||||| ||||||| | ||||||    
T  4068449 gggttttgctaacaagtgcccttagggcactagttaaggattcaaaaaaagaaacaattgttaaattctatgtagaaaaagttactttttggtatttcaa 4068350  T
Q  123 tgtgttcaatacacaaatcccaaaataaaatttctacttt 162  Q
    |  ||  ||||||||| | |||  ||||| ||||||||||    
T  4068349 taagtcaaatacacaatttccatgataaagtttctacttt 4068310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 6336332 - 6336375
Alignment:
Q  98 aaaaagttgctttttgatgtttcaatgtgttcaatacacaaatc 141  Q
    ||||||||| |||||||| |||||||||||| ||||||||||||    
T  6336332 aaaaagttgttttttgatatttcaatgtgttgaatacacaaatc 6336375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 52378430 - 52378485
Alignment:
Q  50 catttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagtt 105  Q
    |||||| ||||||||||||||| |||| |||||||| |||| ||||| ||||||||    
T  52378430 catttgctaaagatttaaaaataaaaataattgataactttaatgtaaaaaaagtt 52378485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 186
Target Start/End: Original strand, 24943552 - 24943682
Alignment:
Q  57 taaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaattt- 155  Q
    ||||||||||| || ||||| ||||| ||   || ||||||||||||||| ||||| || |||||||   || ||||||||| |  ||| |||||||||     
T  24943552 taaagatttaataaagaaaataattgttaaactttatgtagaaaaagttgttttttaatctttcaataaattaaatacacaattttcaagataaaattta 24943651  T
Q  156 ctactttaaacttcttataaagggcccttag 186  Q
    ||||||||| |||||||| ||| | ||||||    
T  24943652 ctactttaagcttcttatcaagtgtccttag 24943682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 172
Target Start/End: Original strand, 25098930 - 25099008
Alignment:
Q  94 gtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttctta 172  Q
    ||||||||| || ||||||| |||| |||| | || |||||||||||   || |||||||||||| |||||||||||||    
T  25098930 gtagaaaaaattactttttgttgttacaatatattaaatacacaaattttaagataaaatttctaatttaaacttctta 25099008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 170
Target Start/End: Complemental strand, 39754046 - 39753935
Alignment:
Q  64 ttaaaaatgaaaacaa-ttgatagctttcatgtagaaaaa----gttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttcta 158  Q
    ||||||||| |||||| |||||| |||||||||| |||||    |||  |||| ||||||||||||| || ||||||||||||| || |||||| ||  |    
T  39754046 ttaaaaatgtaaacaaattgataactttcatgtaaaaaaaaaaagttatttttcgatgtttcaatgtattgaatacacaaatcctaagataaaactttca 39753947  T
Q  159 ctttaaacttct 170  Q
     |||||||||||    
T  39753946 ttttaaacttct 39753935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 173
Target Start/End: Original strand, 8753005 - 8753126
Alignment:
Q  53 ttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttga-tgtttcaatgtgttcaatacacaaatcccaaaataaa 151  Q
    ||||||| ||||  |||||  ||| |||||||| |||| ||||  ||||||||||||||||| | ||| |||||||| |||||||||||   || |||||    
T  8753005 ttgttaatgattctaaaatagaaataattgataactttaatgtgtaaaaagttgctttttgattattttaatgtgttgaatacacaaattttaagataaa 8753104  T
Q  152 atttctactttaaacttcttat 173  Q
     |||||| ||| || |||||||    
T  8753105 gtttctagttttaatttcttat 8753126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 50890686 - 50890811
Alignment:
Q  48 ggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaa-agttgctttttgatgtttcaatgtgttcaatacacaaatcccaaa 146  Q
    |||| ||||||||| || ||||||| ||||||||| ||  ||| ||||| |||| ||||||||||| |  |||||||  ||| |||||| || | ||||     
T  50890686 ggcaattgttaaaggttaaaaaatggaaacaattgctaaattttatgtaaaaaaaagttgctttttaaaatttcaataggttgaatacaaaatttccaag 50890785  T
Q  147 ataaaatttctactttaaacttctta 172  Q
    ||||| |||||||||| | |||||||    
T  50890786 ataaagtttctactttgagcttctta 50890811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 36363624 - 36363572
Alignment:
Q  116 gtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaactt 168  Q
    ||||||||||||| ||| ||  |||||||||| ||||||||| ||||||||||    
T  36363624 gtttcaatgtgttgaatgcatcaatcccaaaacaaaatttcttctttaaactt 36363572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 56128625 - 56128669
Alignment:
Q  94 gtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaa 138  Q
    |||||||||||| ||||||| |||||||||||||| ||| |||||    
T  56128625 gtagaaaaagttactttttgttgtttcaatgtgttgaatgcacaa 56128669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 23 - 206
Target Start/End: Complemental strand, 32615981 - 32615798
Alignment:
Q  23 gggtcttgctaacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaa 122  Q
    |||||||| ||||||||||| ||| || | |||||||||||  ||||||  |||||||||||| |||||||||| | ||||||| ||||| |||||||||    
T  32615981 gggtcttgttaacaagtgcccttagggtacttgttaaagatccaaaaatagaaacaattgataactttcatgtaaataaagttgttttttaatgtttcaa 32615882  T
Q  123 tgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttataaagggcccttagggaacttgctagcatttccc 206  Q
    |||||| ||||||| ||| |||| ||||||||||||||||||||||||||| ||| ||||| |||| ||||| || ||||||||    
T  32615881 tgtgttgaatacacgaattccaagataaaatttctactttaaacttcttatcaagtgccctaagggcacttgttaacatttccc 32615798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 66 - 207
Target Start/End: Complemental strand, 42964887 - 42964747
Alignment:
Q  66 aaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaa 165  Q
    ||||||| ||| |||||||| |||||||||||||||||||  ||||||||||||||||||||| ||||||| |||||||| |||||||||| ||||||||    
T  42964887 aaaaatggaaataattgataactttcatgtagaaaaagttattttttgatgtttcaatgtgttgaatacac-aatcccaagataaaatttccactttaaa 42964789  T
Q  166 cttcttataaagggcccttagggaacttgctagcatttccct 207  Q
    |||||||| ||| |||||  ||||||||| ||||||||||||    
T  42964788 cttcttatcaagtgccctaggggaacttgttagcatttccct 42964747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 207
Target Start/End: Original strand, 7859087 - 7859270
Alignment:
Q  24 ggtcttgctaacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaat 123  Q
    ||||||| ||||||||| | ||| |  |||||||||||||||||||| ||||||||||||||  ||| |||| ||||||||| |||||| |||||| |||    
T  7859087 ggtcttgttaacaagtgtccttaagatatttgttaaagatttaaaaaagaaaacaattgatatattttatgttgaaaaagttactttttaatgttttaat 7859186  T
Q  124 gtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttataaagggcccttagggaacttgctagcatttccct 207  Q
    ||||| ||||||||| |   || |||||||| | ||||||||||| |||| ||||| ||| |||| ||||| ||| ||||||||    
T  7859187 gtgttgaatacacaacttaaaagataaaattaccactttaaactttttatcaagggtcctaagggcacttgttaggatttccct 7859270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 61 - 206
Target Start/End: Original strand, 41235831 - 41235971
Alignment:
Q  61 gatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctact 160  Q
    |||| ||||||| ||||||||||||  ||||||||||||||||||| |||||||||||    |||||| |||||||||||||| || |||||||||||||    
T  41235831 gattcaaaaatggaaacaattgataaatttcatgtagaaaaagttgttttttgatgtt----tgtgttgaatacacaaatccc-aagtaaaatttctact 41235925  T
Q  161 ttaaacttcttataaagggcccttagggaacttgctagcatttccc 206  Q
    |||||||| |||| ||| ||||| | |  ||||| |||||||||||    
T  41235926 ttaaactttttatcaagtgccctaatgacacttgttagcatttccc 41235971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 29912226 - 29912125
Alignment:
Q  81 tgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttataaagggc 180  Q
    ||||| ||| |||||||| ||||||||||||||||||||||||| ||| |||||||||||   || ||||||||||||||||||||||||||| ||| ||    
T  29912226 tgataacttccatgtagataaagttgctttttgatgtttcaatgagttgaatacacaaattttaagataaaatttctactttaaacttcttatcaagtgc 29912127  T
Q  181 cc 182  Q
    ||    
T  29912126 cc 29912125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 208
Target Start/End: Complemental strand, 13244786 - 13244631
Alignment:
Q  53 ttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaa 152  Q
    ||||||| |||| ||||||  |||||||||||| |||| ||||||| ||| ||| |||||||| ||||||| | || ||||||||||| | |||||||||    
T  13244786 ttgttaatgattcaaaaatagaaacaattgataacttttatgtagacaaaattgttttttgatatttcaatatattgaatacacaaattctaaaataaaa 13244687  T
Q  153 tttctactttaaacttcttataaagggcccttagggaacttgctagcatttccctt 208  Q
    |||||| || ||| ||||||| ||| |  || |||||| ||| |||||||||||||    
T  13244686 tttctatttaaaatttcttatcaagtgttctgagggaagttgttagcatttccctt 13244631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 208
Target Start/End: Original strand, 13521702 - 13521857
Alignment:
Q  53 ttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaa 152  Q
    ||||||| |||  ||||||  ||| |||||||| |||||||||| | ||| ||  ||||| ||||||||||||||  |||||||||||  ||||||||||    
T  13521702 ttgttaaggatacaaaaatagaaataattgataactttcatgtaaataaaattattttttaatgtttcaatgtgtagaatacacaaatttcaaaataaaa 13521801  T
Q  153 tttctactttaaacttcttataaagggcccttagggaacttgctagcatttccctt 208  Q
    ||||||||||||||||||||| | | ||||| || | ||||| || ||||||||||    
T  13521802 tttctactttaaacttcttatcaggtgccctaagagcacttgttaacatttccctt 13521857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 53 - 206
Target Start/End: Original strand, 13611237 - 13611390
Alignment:
Q  53 ttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaa 152  Q
    ||||||| |||  ||||||  ||| |||||||| |||||||||| | ||| ||  ||||| ||||||||||||||  |||||||||||  ||||||||||    
T  13611237 ttgttaaggatacaaaaatagaaataattgataactttcatgtaaataaaattattttttaatgtttcaatgtgtagaatacacaaatttcaaaataaaa 13611336  T
Q  153 tttctactttaaacttcttataaagggcccttagggaacttgctagcatttccc 206  Q
    ||||||||||||||||||||| | | ||||| || | ||||| || ||||||||    
T  13611337 tttctactttaaacttcttatcaggtgccctaagagcacttgttaacatttccc 13611390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 41570103 - 41570037
Alignment:
Q  107 ctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttat 173  Q
    ||||||||| |||||||||||| |||||| ||||||||| ||||||||||||||||||| |||||||    
T  41570103 ctttttgatatttcaatgtgttgaatacataaatcccaagataaaatttctactttaaatttcttat 41570037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 24585918 - 24585828
Alignment:
Q  76 acaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaac 166  Q
    |||||||||| |||||||||| | ||  |||||||||||||||| |||||||| |||| ||||||  ||| |||||||||||| |||||||    
T  24585918 acaattgataactttcatgtatataagattgctttttgatgttttaatgtgttgaataaacaaatttcaagataaaatttctattttaaac 24585828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 173
Target Start/End: Original strand, 28626632 - 28626754
Alignment:
Q  51 atttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataa 150  Q
    |||||||||||||  ||||||  ||| ||||| ||  ||||||||| | ||||||| |||||||||||||||||| || || ||| ||||  ||| ||||    
T  28626632 atttgttaaagatccaaaaatagaaataattgttaagtttcatgtaaataaagttgttttttgatgtttcaatgtattgaagacataaatttcaagataa 28626731  T
Q  151 aatttctactttaaacttcttat 173  Q
    | ||| |||||||||||||||||    
T  28626732 attttttactttaaacttcttat 28626754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 31331327 - 31331423
Alignment:
Q  27 cttgctaacaagtgcctttatggcatttgttaaagatttaaaaa--tgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttca 121  Q
    |||||||||||||||||||| |||| | ||||| |||| |||||  | |||||||||||||  |||||| || ||||||||||||||| ||||||||    
T  31331327 cttgctaacaagtgcctttagggcactagttaatgattcaaaaaaataaaaacaattgataattttcatatataaaaagttgcttttttatgtttca 31331423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 41291488 - 41291563
Alignment:
Q  108 tttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttataaagggccct 183  Q
    |||||||||||||||| |||| |||| ||||||| | | ||||||||| ||||||||||||||||| ||| |||||    
T  41291488 tttttgatgtttcaatatgttgaatatacaaatctccatataaaatttatactttaaacttcttattaagtgccct 41291563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 26738514 - 26738588
Alignment:
Q  98 aaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttctta 172  Q
    ||||||||| ||||| |||||||||| |||| |||||||| ||  ||  ||||||||||||||||||||||||||    
T  26738514 aaaaagttgatttttaatgtttcaatatgttgaatacacatatttcaggataaaatttctactttaaacttctta 26738588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 6322850 - 6322907
Alignment:
Q  71 tgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgtt 128  Q
    ||||| || ||||||||||||||||||||||| ||| ||||||||||| |||||||||    
T  6322850 tgaaaccagttgatagctttcatgtagaaaaaattgttttttgatgttccaatgtgtt 6322907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 10409678 - 10409755
Alignment:
Q  96 agaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttat 173  Q
    |||||||||| ||||||||||||| |||||||| ||||||||| |  ||| ||||| |||||| ||||||| ||||||    
T  10409678 agaaaaagttactttttgatgttttaatgtgttaaatacacaagtttcaagataaagtttctattttaaacctcttat 10409755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 53 - 165
Target Start/End: Complemental strand, 34085434 - 34085323
Alignment:
Q  53 ttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaa 152  Q
    ||||||| |||  ||||||  ||| |||||||| |||||||| ||| || ||| |||||||||| ||||||||||| |||||||||    ||| ||||||    
T  34085434 ttgttaaggatccaaaaatagaaataattgataactttcatggagataa-gttactttttgatgattcaatgtgttgaatacacaagcttcaatataaaa 34085336  T
Q  153 tttctactttaaa 165  Q
    |||||||||||||    
T  34085335 tttctactttaaa 34085323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 34187060 - 34186976
Alignment:
Q  53 ttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaat 140  Q
    |||||||||||||||||||| ||||||||||||  ||||||||  ||||| ||| ||||| ||| |||||| |||| |||||||||||    
T  34187060 ttgttaaagatttaaaaatggaaacaattgataattttcatgt--aaaaaattg-ttttttatgattcaatatgttgaatacacaaat 34186976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 14548201 - 14548278
Alignment:
Q  98 aaaaagttgctttttgatgtt---tcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttctta 172  Q
    |||||||||||||||||| ||   |||| ||||| ||||||||||| |||| ||||| |||||||||| || ||||||    
T  14548201 aaaaagttgctttttgatattatttcaacgtgttgaatacacaaattccaagataaagtttctactttgaatttctta 14548278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 44812777 - 44812844
Alignment:
Q  61 gatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgtt 128  Q
    |||| ||||||||||||| ||| || |||| ||||| ||||||||| |||||||||||| | ||||||    
T  44812777 gattcaaaaatgaaaacagttgttaacttttatgtataaaaagttgttttttgatgtttgagtgtgtt 44812844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 1883849 - 1883935
Alignment:
Q  53 ttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgcttttt-gatgtttcaatgtgttcaatacacaa 138  Q
    |||||||| |||| |||||| |||||||||||| ||||  |||| ||||| ||| ||||| ||||||| |||||| | |||||||||    
T  1883849 ttgttaaaaatttgaaaatggaaacaattgataacttttgtgtaaaaaaaattgttttttagatgttttaatgtgctgaatacacaa 1883935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 172
Target Start/End: Complemental strand, 5984291 - 5984172
Alignment:
Q  50 catttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaata 149  Q
    |||||||||| |||| |||| | |||| ||||||||  ||| |||||||||||||   |||||| |||||||||||||| ||| || || | | ||||||    
T  5984291 catttgttaaggattcaaaatt-aaaataattgataaattttatgtagaaaaagtaa-tttttgttgtttcaatgtgttgaatgca-aatttctaaaata 5984195  T
Q  150 aaatttctactttaaacttctta 172  Q
    ||||||| || ||||||||||||    
T  5984194 aaatttccacattaaacttctta 5984172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 41657641 - 41657698
Alignment:
Q  108 tttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaa 165  Q
    |||||||||||| ||| |||| |||||| ||||| ||||||||||| || ||||||||    
T  41657641 tttttgatgttttaatatgttaaatacataaatctcaaaataaaatctccactttaaa 41657698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 38813798 - 38813718
Alignment:
Q  92 atgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttctta 172  Q
    |||||||||||  | |||||| |||||||||| |||| ||||||||| |||||| ||||| |||  | ||| |||||||||    
T  38813798 atgtagaaaaaaattctttttaatgtttcaatatgttgaatacacaattcccaagataaatttttcattttgaacttctta 38813718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 30326823 - 30326636
Alignment:
Q  21 aagggtcttgctaacaagtgcct--ttatggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtt 118  Q
    ||||||||||||||||||||  |  ||| | || ||||||| ||||||||||||  ||||||||||| |||||||||||||||||||| | |||||||||    
T  30326823 aagggtcttgctaacaagtgtgtgcttaggacacttgttaaggatttaaaaatgggaacaattgataactttcatgtagaaaaagttgttctttgatgtt 30326724  T
Q  119 tcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttataaagggcccttagggaacttgctagcatttccc 206  Q
    |||||||||| |||||||||||||||| |||||||||| | |||||||||||||| ||  ||| | |||| |||||  ||||||||||    
T  30326723 tcaatgtgttgaatacacaaatcccaagataaaatttccattttaaacttcttatcaaatgccttaagggcacttgtcagcatttccc 30326636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 173
Target Start/End: Complemental strand, 343095 - 342943
Alignment:
Q  22 agggtcttgctaacaagtgcctttatggcatttgttaaagatttaaaaatga-aaacaattgatagctttcatgtagaaaaagttgctttttgatgtttc 120  Q
    ||||||||| ||||||| ||| ||| | ||||||||||||||| |||||  | |||||||||||| |||| ||| | ||||||||  ||||| |||||||    
T  343095 agggtcttgttaacaagagcccttaggacatttgttaaagattcaaaaaatagaaacaattgataacttttatgcataaaaagttattttttaatgtttc 342996  T
Q  121 aatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttat 173  Q
    |||||||| |||||| |||| |||||| |||||||  | ||||||||| ||||    
T  342995 aatgtgttgaatacataaattccaaaacaaaattttcattttaaactttttat 342943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 205
Target Start/End: Original strand, 24396789 - 24396920
Alignment:
Q  74 aaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttat 173  Q
    |||||||||||| ||||||| || | ||||||| ||||| |||||||||||| || ||||||| ||| | || |||||||||||| ||| ||||| ||||    
T  24396789 aaacaattgataactttcatataaataaagttgttttttaatgtttcaatgttttgaatacacgaattctaagataaaatttctattttcaactttttat 24396888  T
Q  174 aaagggcccttagggaacttgctagcatttcc 205  Q
     ||| ||||| |||| ||||| || |||||||    
T  24396889 caagtgccctaagggcacttgttaacatttcc 24396920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 2248806 - 2248691
Alignment:
Q  74 aaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaa-tcccaaaataaaatttctactttaaacttctta 172  Q
    |||||| |||||  ||| |||| ||||||||| |||||| ||||||||||||||| ||||||||||  || || |||||||||| ||||| |||||||||    
T  2248806 aaacaaatgataagtttgatgttgaaaaagttactttttaatgtttcaatgtgttgaatacacaaacaccgaagataaaatttccactttgaacttctta 2248707  T
Q  173 taaagggcccttaggg 188  Q
      ||| ||||||||||    
T  2248706 gcaagtgcccttaggg 2248691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 53 - 165
Target Start/End: Original strand, 31597517 - 31597630
Alignment:
Q  53 ttgttaaagatttaaaaa-tgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaa 151  Q
    ||||||| |||||||||| | ||||||||| ||| |||| |||||||||||||| |||||| |||||| |||||||| ||| |||||||  ||| | |||    
T  31597517 ttgttaaggatttaaaaaataaaaacaatttataacttttatgtagaaaaagttactttttaatgttttaatgtgttgaatgcacaaatttcaagacaaa 31597616  T
Q  152 atttctactttaaa 165  Q
    ||||| | ||||||    
T  31597617 atttccattttaaa 31597630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 203
Target Start/End: Original strand, 6067501 - 6067656
Alignment:
Q  48 ggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaa 147  Q
    |||| |||||||||| ||||||| ||||| ||||| ||  |||||||||||||||||| |||||| ||  ||||||  ||| ||||||||| | | || |    
T  6067501 ggcacttgttaaagacttaaaaaagaaaataattgttaaatttcatgtagaaaaagtttctttttaatcgttcaataagttgaatacacaatttctaaga 6067600  T
Q  148 taaaatttctactttaaacttcttataaagggcccttagggaacttgctagcattt 203  Q
    |||| ||  |||||||   ||||||| ||||| | |||||| ||||| ||||||||    
T  6067601 taaagttgatactttatgtttcttatcaagggtcgttagggcacttgttagcattt 6067656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 2801413 - 2801303
Alignment:
Q  32 taacaagtgcctttatggcatttgttaaagatttaaaaatga-aaacaattgatagctttcatgtaga-aaaagttgctttttgatgtttcaatgtgttc 129  Q
    ||||||||| |||||  ||||||||||| |||| |||||  | |||||||||||| |||| ||||||| ||||||| |||||| |||||| ||||||||     
T  2801413 taacaagtgtctttagagcatttgttaatgattcaaaaaatagaaacaattgataacttttatgtagaaaaaagttactttttaatgttttaatgtgttg 2801314  T
Q  130 aatacacaaat 140  Q
    |||||| ||||    
T  2801313 aatacataaat 2801303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 53 - 207
Target Start/End: Complemental strand, 2817354 - 2817198
Alignment:
Q  53 ttgttaaagatttaaaaatga-aaacaattgatagctttcatgtagaaaa-agttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataa 150  Q
    ||||||| ||||||||||  | ||||| |||||| |||| ||||| |||| |||| ||||||||||||| || ||||| |||| |||||| |||  | ||    
T  2817354 ttgttaaggatttaaaaaatagaaacagttgataacttttatgtaaaaaatagttactttttgatgttttaacgtgttgaataaacaaattccaggaaaa 2817255  T
Q  151 aatttctactttaaacttcttataaagggcccttagggaacttgctagcatttccct 207  Q
    |||||||| ||||||| |||||| ||| ||  | |||| | ||| ||||||||||||    
T  2817254 aatttctattttaaacctcttatcaagtgctataagggtatttgttagcatttccct 2817198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 183
Target Start/End: Complemental strand, 9050057 - 9049972
Alignment:
Q  98 aaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttataaagggccct 183  Q
    ||||| || |||||| || |||||||||||| ||||||||| |  ||||||||| |||||| ||||||||| |||| ||| |||||    
T  9050057 aaaaaattactttttaatatttcaatgtgttgaatacacaactttcaaaataaactttctattttaaactttttatcaagtgccct 9049972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 23578910 - 23578864
Alignment:
Q  25 gtcttgctaacaagtgcctttatggcatttgttaaagatttaaaaat 71  Q
    |||||||||||||||||  ||| |||| |||||||||||||||||||    
T  23578910 gtcttgctaacaagtgcacttagggcacttgttaaagatttaaaaat 23578864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 24824943 - 24825016
Alignment:
Q  98 aaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttctt 171  Q
    |||||||| |||||| || ||||||| || | ||||||||| | | || | |||||||||||||||||||||||    
T  24824943 aaaaagttactttttaatatttcaatatgctgaatacacaatttctaagacaaaatttctactttaaacttctt 24825016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 48 - 201
Target Start/End: Original strand, 11074493 - 11074646
Alignment:
Q  48 ggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaa 147  Q
    |||| ||||||| |||| ||||||| ||||||| |||| ||| |||| ||||||||||||||||| ||||||||||||||| |||||||||||||||| |    
T  11074493 ggcacttgttaaggattcaaaaatggaaacaatagataacttccatgcagaaaaagttgcttttttatgtttcaatgtgttgaatacacaaatcccaaga 11074592  T
Q  148 taaaatttctactttaaacttcttataaagggcccttagggaacttgctagcat 201  Q
     ||||||||||||||||||||||||| ||| || || |||| ||||| ||||||    
T  11074593 aaaaatttctactttaaacttcttatcaagtgctctaagggcacttgttagcat 11074646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 48 - 173
Target Start/End: Original strand, 37426512 - 37426637
Alignment:
Q  48 ggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaa 147  Q
    |||| |||||||| |||| |||||  |||||||  ||| |||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||     
T  37426512 ggcacttgttaaaaatttgaaaatagaaacaatccataactttcatgtagaaaaaattgctttttgatatttcaatgtgttgaatacacaaatcccaaag 37426611  T
Q  148 taaaatttctactttaaacttcttat 173  Q
    ||||||||||| ||||||||||||||    
T  37426612 taaaatttctattttaaacttcttat 37426637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 173
Target Start/End: Original strand, 40141939 - 40142064
Alignment:
Q  48 ggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaa 147  Q
    |||| ||||||| |||  ||||||  |||||| | ||| |||||||||||| |||||||||||||| |||||||||| ||| |||| ||||||   || |    
T  40141939 ggcacttgttaaggataaaaaaatagaaacaaattataactttcatgtagataaagttgctttttggtgtttcaatgagttgaatatacaaattttaaga 40142038  T
Q  148 taaaatttctactttaaacttcttat 173  Q
    |||| ||| |||||||||||||||||    
T  40142039 taaattttttactttaaacttcttat 40142064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 1944886 - 1944763
Alignment:
Q  23 gggtcttgctaacaagtgcctttatggcatttgttaaagattt-aaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttca 121  Q
    |||||||| |||||||||||| |  || ||||||||||||||  ||||||  |||||||||||| |||| ||  ||||||| || |||||| ||||||||    
T  1944886 gggtcttgttaacaagtgcctcttaggtatttgttaaagattccaaaaatataaacaattgataacttttatacagaaaaaattactttttaatgtttca 1944787  T
Q  122 atgtgttcaatacacaaatcccaa 145  Q
    |||| || ||||||||||| ||||    
T  1944786 atgtattgaatacacaaattccaa 1944763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 165
Target Start/End: Original strand, 3954427 - 3954539
Alignment:
Q  53 ttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaa 152  Q
    ||||||||||||| |||||  ||| |||| ||| |||||||||  ||||| || |||||| || |||||||| ||| ||| ||||||||| || ||||||    
T  3954427 ttgttaaagattttaaaatagaaataattaataactttcatgtgtaaaaaattactttttaatatttcaatgagttgaattcacaaatcctaagataaaa 3954526  T
Q  153 tttctactttaaa 165  Q
    |||||| ||||||    
T  3954527 tttctattttaaa 3954539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 16011796 - 16011908
Alignment:
Q  56 ttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaattt 155  Q
    |||| |||| ||||||  ||| |||||||| |||| ||||| ||||| ||  |||||||| ||| |||||||| |||||| |||| |||| |||||| ||    
T  16011796 ttaaggattcaaaaatataaataattgataacttttatgtaaaaaaaattattttttgattttttaatgtgtttaatacataaattccaagataaaactt 16011895  T
Q  156 ctactttaaactt 168  Q
    |||||||||||||    
T  16011896 ctactttaaactt 16011908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 31549744 - 31549820
Alignment:
Q  66 aaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcc 142  Q
    ||||||| ||||| |||||| |||| ||||| |||||||||||||||||||||||||| | || |||||| ||||||    
T  31549744 aaaaatggaaacacttgataactttaatgtaaaaaaagttgctttttgatgtttcaatatattaaatacataaatcc 31549820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 139
Target Start/End: Complemental strand, 12204768 - 12204661
Alignment:
Q  32 taacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaa 131  Q
    ||||||||||||||||  || ||||||| |||||| ||||| ||||||||||||  |||  |||| |||||  || ||||| ||||||||||||||| ||    
T  12204768 taacaagtgcctttataacaattgttaatgatttagaaatggaaacaattgataatttttctgtaaaaaaatatgttttttaatgtttcaatgtgttaaa 12204669  T
Q  132 tacacaaa 139  Q
    || |||||    
T  12204668 tatacaaa 12204661  T

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Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 173
Target Start/End: Complemental strand, 19204480 - 19204373
Alignment:
Q  66 aaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaa 165  Q
    |||||| |||||||||||||  ||| |||| |||||||||  ||||| ||||||||||||||| |||||| ||||| ||| |||||| ||| | |||||     
T  19204480 aaaaataaaaacaattgataatttttatgttgaaaaagttatttttttatgtttcaatgtgttgaatacataaatctcaagataaaacttcaattttaag 19204381  T
Q  166 cttcttat 173  Q
     |||||||    
T  19204380 tttcttat 19204373  T

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Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 172
Target Start/End: Original strand, 752116 - 752266
Alignment:
Q  22 agggtcttgctaacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttca 121  Q
    |||||||||||||||||| || ||| |||| |||||||  |||  |||||  ||| ||||| |   ||| ||||||||||| || |||||| | ||||||    
T  752116 agggtcttgctaacaagtacccttagggcacttgttaagaattctaaaatagaaataattggttagttttatgtagaaaaaattactttttcaagtttca 752215  T
Q  122 atgtgttcaatacacaaatcccaaaataaaatttctactttaaacttctta 172  Q
    ||||||| ||| ||  |||||||| | ||||||||| ||||| ||||||||    
T  752216 atgtgttgaatgcatcaatcccaagacaaaatttcttctttagacttctta 752266  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 53 - 209
Target Start/End: Complemental strand, 12880200 - 12880044
Alignment:
Q  53 ttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaa 152  Q
    ||||||| |||| ||||||| ||| ||||||||  ||| ||||||||||| || |||||| |  |||||||||||| |||||||   | |||| ||||||    
T  12880200 ttgttaaggattcaaaaatggaaataattgataagttttatgtagaaaaaattactttttaaaatttcaatgtgttgaatacaccgtttccaagataaaa 12880101  T
Q  153 tttctactttaaacttcttataaagggcccttagggaacttgctagcatttccctta 209  Q
     |||  ||||| | |||| |  ||| |||||||||  ||||| ||||||||||||||    
T  12880100 cttcctctttagatttctaaacaagtgcccttaggtcacttgttagcatttccctta 12880044  T

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Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 19341094 - 19341166
Alignment:
Q  68 aaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaat 140  Q
    ||||| ||||||| |||| | |||||||| |||| |||||||||| |||||| |||||||| |||||||||||    
T  19341094 aaatggaaacaatcgataacattcatgtaaaaaatgttgcttttttatgttttaatgtgttaaatacacaaat 19341166  T

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Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 8741018 - 8741096
Alignment:
Q  98 aaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttataaag 177  Q
    ||||| ||| ||||||| |||| ||||| || ||||||||||| |||| |||||||||||| ||||||||| ||||||||    
T  8741018 aaaaaattgttttttgaagttt-aatgtattgaatacacaaattccaagataaaatttctattttaaacttgttataaag 8741096  T

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Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 124
Target Start/End: Complemental strand, 38788817 - 38788767
Alignment:
Q  74 aaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatg 124  Q
    |||||||||| | ||||||||||||||||||| ||||||||||||| ||||    
T  38788817 aaacaattgacaactttcatgtagaaaaagttactttttgatgttttaatg 38788767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 138
Target Start/End: Original strand, 39575446 - 39575555
Alignment:
Q  29 tgctaacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgtt 128  Q
    ||||||||||| || ||| |||| || |||| |||| ||||  | ||| |||| |||  ||| ||||| |||||||| |||||||| |||||||||||||    
T  39575446 tgctaacaagttcccttagggcacttattaaggattcaaaagaggaaataatttataaattttatgtataaaaagtttctttttgaagtttcaatgtgtt 39575545  T
Q  129 caatacacaa 138  Q
     |||||||||    
T  39575546 aaatacacaa 39575555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 9548447 - 9548400
Alignment:
Q  58 aaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagtt 105  Q
    ||||||| ||||||||||||| |||||| |||||||||| ||||||||    
T  9548447 aaagattaaaaaatgaaaacatttgataactttcatgtataaaaagtt 9548400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 173
Target Start/End: Original strand, 31663572 - 31663719
Alignment:
Q  26 tcttgctaacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgt 125  Q
    |||||||||||| |||| | | | || ||||||| |||| | ||||||||||||||||||  ||| || ||||||||||   ||||||||||||| || |    
T  31663572 tcttgctaacaaatgccataaggacacttgttaaggattcacaaatgaaaacaattgataaattttatatagaaaaagtaattttttgatgtttcgatat 31663671  T
Q  126 gttcaatacacaaatcccaaaataaaatttctactttaaacttcttat 173  Q
    ||| |||  ||||||   |  | |||||||||| ||||||||| ||||    
T  31663672 gttgaatgtacaaattttatgaaaaaatttctattttaaactttttat 31663719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 205
Target Start/End: Complemental strand, 40083530 - 40083423
Alignment:
Q  98 aaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttataaagggcccttagggaacttgcta 197  Q
    ||||| || ||||||| ||||||||||| || ||||||||| | | || |||||| || |||||||||||||| |  |||  |||||| |  ||||||||    
T  40083530 aaaaaattactttttgttgtttcaatgtattgaatacacaatttctaagataaaacttttactttaaacttctaaacaagtacccttatgacacttgcta 40083431  T
Q  198 gcatttcc 205  Q
    ||||||||    
T  40083430 gcatttcc 40083423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 172
Target Start/End: Complemental strand, 1852972 - 1852830
Alignment:
Q  30 gctaacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttc 129  Q
    ||||||||||| | |||  | ||||||||| |||| ||||| ||||||||||||||  ||| || || ||||| ||||||||  || ||||||| | ||     
T  1852972 gctaacaagtgtccttagcgtatttgttaaggattcaaaaaagaaaacaattgataaattttatataaaaaaaattgcttttcaatatttcaatatattg 1852873  T
Q  130 aatacacaaatcccaaaataaaatttctactttaaacttctta 172  Q
    | |||| || | |||| ||||| |||||| ||| |||||||||    
T  1852872 attacataatttccaagataaagtttctattttgaacttctta 1852830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 37038537 - 37038491
Alignment:
Q  116 gtttcaatgtgttcaatacacaaatcccaaaataaaatttctacttt 162  Q
    ||||||||||||| |||||||||||| ||| ||||||||||| ||||    
T  37038537 gtttcaatgtgttgaatacacaaatcgcaagataaaatttcttcttt 37038491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 155
Target Start/End: Complemental strand, 44949336 - 44949234
Alignment:
Q  53 ttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaa 152  Q
    |||||||  ||||||||||||||||||||| ||  ||| | |||||||| |||| ||||| || |||||||  ||| ||||||||| |  ||| ||||||    
T  44949336 ttgttaagaatttaaaaatgaaaacaattgttaaattttacgtagaaaatgttgttttttaatctttcaataagttgaatacacaattttcaagataaaa 44949237  T
Q  153 ttt 155  Q
    |||    
T  44949236 ttt 44949234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 140
Target Start/End: Original strand, 36626164 - 36626252
Alignment:
Q  51 atttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaat 140  Q
    |||||||||  |||||||||| |||| ||||||||  ||| || || ||||| ||| ||||| || ||||||||||||||||||| ||||    
T  36626164 atttgttaagaatttaaaaataaaaataattgataatttttatataaaaaaa-ttgttttttaatatttcaatgtgttcaatacataaat 36626252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 165
Target Start/End: Complemental strand, 34335124 - 34335021
Alignment:
Q  61 gatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctact 160  Q
    ||||||| |||  |||||||| |||  |||| |||||| ||| || ||||||||||||||||||| || |||| | ||||   || ||||||||||||||    
T  34335124 gatttaagaattgaaacaattaataattttcgtgtagataaaattactttttgatgtttcaatgt-ttgaatatataaattttaagataaaatttctact 34335026  T
Q  161 ttaaa 165  Q
    |||||    
T  34335025 ttaaa 34335021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 173
Target Start/End: Original strand, 8611723 - 8611875
Alignment:
Q  22 agggtcttgctaacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttca 121  Q
    ||||||||||||||||||||| | ||| || | ||||| |||| |||| || ||||||||||||  ||||||||||||||||||||||||||||||||||    
T  8611723 agggtcttgctaacaagtgccctaatgacactcgttaaggattcaaaattggaaacaattgataattttcatgtagaaaaagttgctttttgatgtttca 8611822  T
Q  122 atgtgttcaatacaca-aatcccaaaataaaatttctactttaaacttcttat 173  Q
    ||||||| || |  || |||||||| ||||||||||| ||||||| |||||||    
T  8611823 atgtgttgaaaatccacaatcccaagataaaatttctgctttaaatttcttat 8611875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 48 - 188
Target Start/End: Original strand, 844738 - 844878
Alignment:
Q  48 ggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaa 147  Q
    |||| ||||||| |||||||||||| |||||||||||   ||| |||  ||||| ||| |||||| ||||||||||||||| ||||||||| | ||||||    
T  844738 ggcacttgttaaggatttaaaaatggaaacaattgatgaattttatgatgaaaatgttactttttaatgtttcaatgtgttgaatacacaacttccaaaa 844837  T
Q  148 taaaatttctactttaaacttcttataaagggcccttaggg 188  Q
    || |||| | |||||||||||||||| ||| ||||| ||||    
T  844838 tagaattaccactttaaacttcttatcaagtgccctaaggg 844878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 20975636 - 20975555
Alignment:
Q  74 aaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaattt 155  Q
    |||||||||||| ||| ||||| |||||||||| || ||||||||||||| |||||||||||| ||||||||||||||||||    
T  20975636 aaacaattgataacttacatgttgaaaaagttgtttgttgatgtttcaatatgttcaatacacgaatcccaaaataaaattt 20975555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 152
Target Start/End: Original strand, 41360883 - 41360983
Alignment:
Q  53 ttgttaaagatttaaaa-atgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaa 151  Q
    |||||||||||| |||| |||||||||||||||| |||| |||||||||| ||||| ||||||||||||||| |||| |||| ||||||| ||| |||||    
T  41360883 ttgttaaagattcaaaaaatgaaaacaattgataacttttatgtagaaaatgttgccttttgatgtttcaatatgttaaatatacaaatctcaatataaa 41360982  T
Q  152 a 152  Q
    |    
T  41360983 a 41360983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 56 - 173
Target Start/End: Original strand, 13203125 - 13203242
Alignment:
Q  56 ttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagtt-gctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatt 154  Q
    ||||||||| |||||| |||| ||||||||  ||||||||||||||||||   ||||| ||||||||||||||| ||| ||||||| | |||||||||||    
T  13203125 ttaaagattcaaaaataaaaataattgataattttcatgtagaaaaagttatttttttaatgtttcaatgtgttgaat-cacaaattctaaaataaaatt 13203223  T
Q  155 tctactttaaacttcttat 173  Q
    ||||  |||||||| ||||    
T  13203224 tctatgttaaactttttat 13203242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 173
Target Start/End: Complemental strand, 19608866 - 19608771
Alignment:
Q  78 aattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttat 173  Q
    ||||||||  ||| |||||||||||||| |||||| ||||||||||||||| |||| |||||| |||| ||||| ||||   ||| ||||||||||    
T  19608866 aattgataatttttatgtagaaaaagttactttttaatgtttcaatgtgttgaatagacaaattccaagataaagtttcctttttgaacttcttat 19608771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 172
Target Start/End: Original strand, 41807219 - 41807341
Alignment:
Q  49 gcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaat 148  Q
    ||||||||||| |||||||||||  ||||||||  ||  ||| |||||||||||||| | |||| || |||||||  ||| ||||||||| |  ||||||    
T  41807219 gcatttgttaaggatttaaaaatagaaacaattactaaattttatgtagaaaaagttac-ttttaatatttcaataggttgaatacacaatttacaaaat 41807317  T
Q  149 aaaatttctactttaaacttctta 172  Q
    |||||||||||||| | |||||||    
T  41807318 aaaatttctactttgagcttctta 41807341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 950615 - 950707
Alignment:
Q  20 aaagggtcttgctaacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgcttttt 112  Q
    |||||||  |||||||||||||| ||| |||| | ||||| |||| ||||| || |||||||| ||| ||| |||||||||||||| ||||||    
T  950615 aaagggttatgctaacaagtgcccttagggcactagttaaggattcaaaaaagataacaattgctagattttatgtagaaaaagttacttttt 950707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 6562689 - 6562633
Alignment:
Q  108 tttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaa 164  Q
    ||||||||||||||||||||| |||||||||||   |||||||||||| ||||||||    
T  6562689 tttttgatgtttcaatgtgttgaatacacaaattttaaaataaaatttttactttaa 6562633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 40323962 - 40323888
Alignment:
Q  66 aaaaatgaaaacaattgatagctttcatg--tagaaaaagttgctttttgatgtttcaatgtgttcaatacacaa 138  Q
    ||||||||||||||||||||  ||| |||   | |||||||| ||||||||||||| ||||||||||||||||||    
T  40323962 aaaaatgaaaacaattgataatttttatgcaaaaaaaaagttactttttgatgttttaatgtgttcaatacacaa 40323888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 207
Target Start/End: Original strand, 41174346 - 41174453
Alignment:
Q  100 aaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttataaagggcccttagggaacttgctagc 199  Q
    |||||| |||||| || |||||||||||| ||| ||||| | |||| |||||| ||| ||||||| |||||||| ||| || ||||| | ||||| || |    
T  41174346 aaagttactttttaatatttcaatgtgttaaatgcacaacttccaagataaaacttccactttaagcttcttatcaagtgctcttagagcacttgttaac 41174445  T
Q  200 atttccct 207  Q
    ||||||||    
T  41174446 atttccct 41174453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 42035887 - 42035749
Alignment:
Q  21 aagggtcttgctaacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgttt- 119  Q
    |||||| ||| |||| ||||||||||   || ||||||| |||  ||||||  | ||||||||||  ||| ||||| | ||||||||||||| || |||     
T  42035887 aagggtattgttaacgagtgcctttagcacacttgttaaggatccaaaaatagacacaattgataatttttatgtaaataaagttgctttttaatatttt 42035788  T
Q  120 caatgtgttcaatacacaaatcccaaaataaaatttcta 158  Q
    ||||||||| ||||||||| |  ||| ||||||||||||    
T  42035787 caatgtgttaaatacacaattttcaagataaaatttcta 42035749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 165
Target Start/End: Original strand, 31409876 - 31409964
Alignment:
Q  74 aaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaa 165  Q
    |||||||||||| |||  ||||||||||  || ||||  ||||||| |||||||| ||||||||||  |||||||||||  |||||||||||    
T  31409876 aaacaattgataacttatatgtagaaaatattactttaagatgttttaatgtgttgaatacacaaa--ccaaaataaaa-atctactttaaa 31409964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 48 - 184
Target Start/End: Complemental strand, 52698553 - 52698417
Alignment:
Q  48 ggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaa 147  Q
    |||| ||||||| |||| ||||||| |||||||||||| |||| ||| ||||||||||| |||||| | |||||||||||| ||||||||| |||||| |    
T  52698553 ggcacttgttaaggattaaaaaatggaaacaattgataacttttatggagaaaaagttgttttttgttatttcaatgtgttgaatacacaattcccaaga 52698454  T
Q  148 taaaatttctactttaaacttcttataaagggccctt 184  Q
     ||||||||||||||| ||||||||| ||| ||||||    
T  52698453 aaaaatttctactttagacttcttatcaagtgccctt 52698417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 194
Target Start/End: Complemental strand, 7445063 - 7444889
Alignment:
Q  23 gggtcttgctaacaagtg-cct--ttatggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgttt 119  Q
    |||||||| ||||||||| |||  ||| |||| ||||||||||||  |||||  ||| |||||||| |||||||||| |||||||||||||||||| |||    
T  7445063 gggtcttgttaacaagtgtcctccttagggcacttgttaaagattctaaaatagaaataattgataactttcatgtataaaaagttgctttttgatattt 7444964  T
Q  120 caatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttataaagggcccttagggaacttg 194  Q
    ||||||||| |||||||||||| ||| ||||| ||||| |||| || ||||||| ||| ||||| |||| |||||    
T  7444963 caatgtgttgaatacacaaatctcaagataaagtttcttctttgaatttcttatcaagtgccctaagggcacttg 7444889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 209
Target Start/End: Complemental strand, 44698124 - 44697990
Alignment:
Q  75 aacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttata 174  Q
    |||||||||||  ||| |||| ||||||||| |||||| |||||||||| |||| ||||||||| | |||| |||||| ||| ||||||||||| ||||     
T  44698124 aacaattgataaattttatgttgaaaaagttactttttaatgtttcaatatgttgaatacacaacttccaagataaaacttccactttaaacttattatc 44698025  T
Q  175 aagggcccttagggaacttgctagcatttccctta 209  Q
    ||| ||||| |||| ||||| ||| ||||||||||    
T  44698024 aagtgccctaagggcacttgttagtatttccctta 44697990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 9433932 - 9433820
Alignment:
Q  21 aagggtcttgctaacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttc 120  Q
    |||||||||||||||||||||| ||| |||| ||||||| ||||         |||||||||||| ||| ||| |||||||||||||| |||||||||||    
T  9433932 aagggtcttgctaacaagtgccattagggcagttgttaacgatt---------aaacaattgataacttgcatatagaaaaagttgctctttgatgtttc 9433842  T
Q  121 aatgtgttcaatacacaaatcc 142  Q
    |||||||| |||||||||||||    
T  9433841 aatgtgttgaatacacaaatcc 9433820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 173
Target Start/End: Complemental strand, 11452001 - 11451858
Alignment:
Q  23 gggtcttgctaacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaa 122  Q
    ||||||||||||||| || || ||  ||| |||||||||||||||||| ||||||||||||||       ||| ||||||||| |||||| || ||||||    
T  11452001 gggtcttgctaacaaatgtctctagagcacttgttaaagatttaaaaaagaaaacaattgata-------tgttgaaaaagttactttttaatatttcaa 11451909  T
Q  123 tgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttat 173  Q
     ||||| |||||| || || ||| |||||||||||||||||||||| ||||    
T  11451908 cgtgttgaatacataactctcaatataaaatttctactttaaactttttat 11451858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 173
Target Start/End: Original strand, 27262760 - 27262859
Alignment:
Q  74 aaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttat 173  Q
    |||||||||||| |||| ||||||||||| || |||||| |||||| |||||||| ||||||||||| | || | |||||||| | ||||||||||||||    
T  27262760 aaacaattgataacttttatgtagaaaaaattactttttaatgttttaatgtgttgaatacacaaattctaagacaaaatttccattttaaacttcttat 27262859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 47018932 - 47019128
Alignment:
Q  22 agggtcttgctaacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaag-ttgctttttgatgtttc 120  Q
    ||||||||||||||||  ||| ||| |||| ||| |||||||  ||| ||| ||| | |||||| ||||||||||||||||  |||||||||||| ||||    
T  47018932 agggtcttgctaacaaacgcccttagggcacttgctaaagatc-aaacatggaaaaatttgataactttcatgtagaaaaaaattgctttttgatatttc 47019030  T
Q  121 aatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttataaagggcccttagggaacttgctagcatttcccttataaaaaata 218  Q
    ||||| || ||| || |||| |||| | |||| ||| |||||||||||||||| ||| ||| | ||   ||||| |||||||| |||| ||| |||||    
T  47019031 aatgtattgaatgcaaaaattccaagaaaaaacttccactttaaacttcttatcaagtgccttaagatcacttgttagcattttccttttaataaata 47019128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 53 - 168
Target Start/End: Complemental strand, 32003128 - 32003013
Alignment:
Q  53 ttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaa 152  Q
    ||||| ||||||  |||||  ||||||||||||  | | ||||||||||| ||| |||||||| ||||||| |||| ||||| ||||||||||||||| |    
T  32003128 ttgtttaagattctaaaatagaaacaattgataaatcttatgtagaaaaaattgttttttgatatttcaatatgttgaatacgcaaatcccaaaataaga 32003029  T
Q  153 tttctactttaaactt 168  Q
    |||||| ||| |||||    
T  32003028 tttctattttgaactt 32003013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 47235593 - 47235506
Alignment:
Q  53 ttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaat 140  Q
    |||||||  ||| ||||||  |||||||||||| |||||||||| | ||||||||||||| |||||||||| |||| |||||||||||    
T  47235593 ttgttaagaattcaaaaatagaaacaattgataactttcatgtaaataaagttgctttttaatgtttcaatttgttgaatacacaaat 47235506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 31963041 - 31963107
Alignment:
Q  107 ctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttat 173  Q
    |||||| ||||||||||||||| ||||||||||| |||||| |||||||| | ||||||||||||||    
T  31963041 ctttttaatgtttcaatgtgttgaatacacaaattccaaaacaaaatttccattttaaacttcttat 31963107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 24980817 - 24980918
Alignment:
Q  53 ttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaa 152  Q
    ||||||| |||  ||||||  ||||||||||||  ||| |||||||  ||||||||||||| |||||||||||||| ||||||||||| | || ||||||    
T  24980817 ttgttaaggatccaaaaatataaacaattgataatttttatgtagattaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaa 24980916  T
Q  153 tt 154  Q
    ||    
T  24980917 tt 24980918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 24989575 - 24989676
Alignment:
Q  53 ttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaa 152  Q
    ||||||| |||  ||||||  ||||||||||||  ||| |||||||  ||||||||||||| |||||||||||||| ||||||||||| | || ||||||    
T  24989575 ttgttaaggatccaaaaatataaacaattgataatttttatgtagattaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaaa 24989674  T
Q  153 tt 154  Q
    ||    
T  24989675 tt 24989676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 206
Target Start/End: Original strand, 42592675 - 42592831
Alignment:
Q  50 catttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaata 149  Q
    |||| ||||||||||||||||   ||| ||||||||  ||| |||| |||||| || |||||| | ||||||||| ||| ||||||||| | |||| |||    
T  42592675 cattagttaaagatttaaaaaaagaaataattgataaattttatgttgaaaaaattactttttaacgtttcaatgggttgaatacacaacttccaagata 42592774  T
Q  150 aaatttctactttaaacttcttataaagggcccttagggaacttgctagcatttccc 206  Q
    ||  ||| |||||||||||||||| ||   ||||| ||  ||||| |||||||||||    
T  42592775 aaccttccactttaaacttcttatcaaatacccttgggacacttgttagcatttccc 42592831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 173
Target Start/End: Original strand, 49805964 - 49806084
Alignment:
Q  54 tgttaaagatttaaaaatga-aaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaa 152  Q
    |||||||||||||||||  | |||||||| ||| |||| |||||||||||||| |||||| || ||| |||||||| ||| |||||||  ||| | ||||    
T  49805964 tgttaaagatttaaaaaatagaaacaatttataacttttatgtagaaaaagttacttttttatattttaatgtgttgaatgcacaaatttcaagacaaaa 49806063  T
Q  153 tttctactttaaacttcttat 173  Q
    ||| || ||||||| ||||||    
T  49806064 tttttattttaaacctcttat 49806084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 50 - 203
Target Start/End: Complemental strand, 42479592 - 42479439
Alignment:
Q  50 catttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaata 149  Q
    ||||||||||||||| |||||   ||||||||||||  ||||||||| ||||||||  ||||| |||||| |||| ||| |||| ||||| ||||| |||    
T  42479592 catttgttaaagattcaaaaaaataaacaattgataattttcatgta-aaaaagttatttttttatgttttaatgagttgaatatacaaa-cccaagata 42479495  T
Q  150 aaatttctactttaaacttcttataaagggccct--tagggaacttgctagcattt 203  Q
    ||||||  | ||||| |||||||| |||  ||||  ||||| ||||| ||||||||    
T  42479494 aaattttcattttaaccttcttatcaagtacccttatagggcacttgttagcattt 42479439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 9682351 - 9682246
Alignment:
Q  53 ttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaa 152  Q
    ||||||||||||||||||| |||| ||||||||  ||| |||||||||  |||  |||||| ||||| |||||||| ||| ||||| |  ||| ||||||    
T  9682351 ttgttaaagatttaaaaataaaaataattgataaattt-atgtagaaattgttattttttgttgttttaatgtgttgaatgcacaattttcaagataaaa 9682253  T
Q  153 tttctac 159  Q
    |||||||    
T  9682252 tttctac 9682246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 26478128 - 26478062
Alignment:
Q  75 aacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatc 141  Q
    |||||||||||  ||| ||||||||||||||  |||||||||||| |||||||| | ||||||||||    
T  26478128 aacaattgataatttttatgtagaaaaagttattttttgatgttttaatgtgttgagtacacaaatc 26478062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 1862121 - 1862198
Alignment:
Q  100 aaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttataaag 177  Q
    ||||||||||||| | |||  ||||| || |||||| |||||||||||||||||||||  |||||| |||||| ||||    
T  1862121 aaagttgctttttaaagttataatgtattgaatacataaatcccaaaataaaatttcttatttaaatttcttaaaaag 1862198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 173
Target Start/End: Complemental strand, 44529373 - 44529252
Alignment:
Q  52 tttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaa 151  Q
    ||||||||  |||| |||| ||||  ||||||||  ||| |||| ||||||||| |||||| |||||| ||| |||| ||||||||| |   || |||||    
T  44529373 tttgttaagaattttaaaaagaaagtaattgataaattttatgttgaaaaagttactttttaatgttttaatatgttgaatacacaacttttaagataaa 44529274  T
Q  152 atttctactttaaacttcttat 173  Q
    | ||| ||||||||||||||||    
T  44529273 acttccactttaaacttcttat 44529252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 32745671 - 32745727
Alignment:
Q  108 tttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaa 164  Q
    ||||||||||||||||||||| | ||||||| | ||||  |||||||||||||||||    
T  32745671 tttttgatgtttcaatgtgttgattacacaatttccaatgtaaaatttctactttaa 32745727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 48902883 - 48902999
Alignment:
Q  92 atgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttataaagggcccttagggaac 191  Q
    |||||| |||||||  ||||| | ||| |||||| || ||||||| | ||| || ||||||||||| ||||  ||||||||  ||| |||||||||| ||    
T  48902883 atgtagcaaaagttattttttaaagttccaatgttttgaatacaccattcctaagataaaatttcttcttttgacttcttagcaagtgcccttagggcac 48902982  T
Q  192 ttgctagcatttccctt 208  Q
     || |||||||||||||    
T  48902983 ctgttagcatttccctt 48902999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 151
Target Start/End: Complemental strand, 39527117 - 39527014
Alignment:
Q  48 ggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaa 147  Q
    |||| ||||||| |||| |||| || ||| ||| ||||  ||| |||||||||||||| ||||||| |||||||||| ||| ||| ||||| | |||| |    
T  39527117 ggcacttgttaaggattcaaaattggaaataatcgataaattttatgtagaaaaagttcctttttgttgtttcaatgggttgaatgcacaatttccaaga 39527018  T
Q  148 taaa 151  Q
    ||||    
T  39527017 taaa 39527014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 46299570 - 46299504
Alignment:
Q  56 ttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaat 123  Q
    ||||||| | |||||| |||||||||||||| |||||| || ||||||||| ||||| ||||||||||    
T  46299570 ttaaagactcaaaaataaaaacaattgatagttttcatataaaaaaagttg-ttttttatgtttcaat 46299504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 26816574 - 26816628
Alignment:
Q  74 aaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgtt 128  Q
    |||||||||||| |||||||||||   || ||||||| |||||||||||||||||    
T  26816574 aaacaattgataactttcatgtagtttaaattgctttgtgatgtttcaatgtgtt 26816628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 36995196 - 36995362
Alignment:
Q  21 aagggtcttgctaacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgat-agctttcatgtagaaaaagttgctttttgatgttt 119  Q
    |||||||||||||||||||||| ||| |||| ||||||| |||  ||||||| ||| ||||| | |  ||| | |||||||||||| |||| | |  |||    
T  36995196 aagggtcttgctaacaagtgcccttagggcacttgttaaggatacaaaaatggaaataattggtaaatttttaagtagaaaaagttactttataaaattt 36995295  T
Q  120 caatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttataaagggcccttag 186  Q
    |||||  || ||| ||| | | |||||| ||||||||| ||||  ||||||||  ||| ||||||||    
T  36995296 caatgcattgaatgcaccatttccaaaacaaaatttcttctttggacttcttaacaagtgcccttag 36995362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 1871297 - 1871374
Alignment:
Q  100 aaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttataaag 177  Q
    ||||||| ||||| | |||  ||||| || |||||| |||||||||||||||||||||  |||||| |||||| ||||    
T  1871297 aaagttgttttttaaagttataatgtattgaatacataaatcccaaaataaaatttcttatttaaatttcttaaaaag 1871374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 164
Target Start/End: Complemental strand, 5173154 - 5173042
Alignment:
Q  52 tttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaa 151  Q
    |||||||||||||| ||| |  ||| ||||| ||  ||| || ||||||||||| |||||| | |||| ||| |||| ||| ||  |||||||| |||||    
T  5173154 tttgttaaagattttaaattagaaagaattggtaagttttatatagaaaaagttactttttcaagttttaatatgttgaatgcatcaatcccaatataaa 5173055  T
Q  152 atttctactttaa 164  Q
    |||||| ||||||    
T  5173054 atttcttctttaa 5173042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 177
Target Start/End: Original strand, 22156756 - 22156883
Alignment:
Q  53 ttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttg-atgtttcaatgtgttcaatacacaaatccc--aaaata 149  Q
    ||||||| |||| ||||||| |||||||  ||| | || || || ||||||||| |||||  |||||||| ||| || ||||| ||||||||  |||| |    
T  22156756 ttgttaacgattaaaaaatggaaacaataaataacatttatataaaaaaagttgttttttttatgtttcattgttttgaatactcaaatccctaaaaaaa 22156855  T
Q  150 aaatttctactttaaacttcttataaag 177  Q
    ||| || |||||||||||| ||||||||    
T  22156856 aaaattatactttaaactttttataaag 22156883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 37599667 - 37599711
Alignment:
Q  94 gtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaa 138  Q
    |||||||||||| ||||||| |||||||||||||| ||| |||||    
T  37599667 gtagaaaaagttactttttgctgtttcaatgtgttgaatgcacaa 37599711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 41885057 - 41884985
Alignment:
Q  73 aaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaa 145  Q
    |||||||||||||  ||| || ||||  |||||||||||| |||||||||||| || | ||||||| ||||||    
T  41885057 aaaacaattgataaattttatatagattaagttgctttttaatgtttcaatgtcttgattacacaattcccaa 41884985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 15496102 - 15496289
Alignment:
Q  23 gggtcttgctaacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaa 122  Q
    |||||||| |||||| || | ||| | |||||||||| ||||  |||||  ||| |||||||| |||||||||   |||||||||||||||||  |||||    
T  15496102 gggtcttgttaacaaatgtccttaggacatttgttaaggattccaaaatataaataattgataactttcatgtgttaaaagttgctttttgataattcaa 15496201  T
Q  123 tgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttataaagggcccttagggaacttgctagcatttcccttat 210  Q
    | |||| |||||||||||||||| ||||| || |||||||||| ||||||| ||||||| | |||| ||||| || ||||| ||||||    
T  15496202 tatgttgaatacacaaatcccaagataaagttcctactttaaatttcttatcaagggccataagggcacttgttaacattttccttat 15496289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 208
Target Start/End: Original strand, 31732083 - 31732225
Alignment:
Q  66 aaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaa 165  Q
    ||||||| ||| |||| ||| ||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| |||||| ||| | ||||      
T  31732083 aaaaatggaaataattcataactttcatgttgaaaaagttgctttttgatgtttcaatatgttgaatacacaaatcccaagataaaacttccattttagg 31732182  T
Q  166 cttcttataaagggcccttagggaacttgctagcatttccctt 208  Q
    ||||||||  || ||||  |||| ||||| |||||||||||||    
T  31732183 cttcttatctagtgccccaagggcacttgttagcatttccctt 31732225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 57 - 173
Target Start/End: Original strand, 34600776 - 34600893
Alignment:
Q  57 taaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttt-tgatgtttcaatgtgttcaatacacaaatcccaaaataaaattt 155  Q
    |||||| | ||| |||||||||||||||| |||| ||||| ||||||||  |||| ||||||| ||||||||| | |||||||||||||||||||||| |    
T  34600776 taaagaatcaaatatgaaaacaattgataacttttatgtataaaaagttatttttttgatgttacaatgtgttgattacacaaatcccaaaataaaatat 34600875  T
Q  156 ctactttaaacttcttat 173  Q
     | |||||||||||||||    
T  34600876 ttgctttaaacttcttat 34600893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 27473650 - 27473743
Alignment:
Q  22 agggtcttgctaacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgat 115  Q
    ||||| |||||||||||||  |||| || | ||||||| ||||||||||| |||| |||||||| ||||||| |||||||||||||||||||||    
T  27473650 agggttttgctaacaagtgtttttaaggtacttgttaatgatttaaaaatcaaaataattgataactttcatttagaaaaagttgctttttgat 27473743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 173
Target Start/End: Complemental strand, 45076840 - 45076719
Alignment:
Q  53 ttgttaaagattta-aaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaa 151  Q
    ||||||| |||||| |||||||||||| |||| | |||||||||||||||||||  |||||    |||||||||||| |||||| ||||| |||| |||     
T  45076840 ttgttaaggatttagaaaatgaaaacatttgaaaactttcatgtagaaaaagtttttttttttattttcaatgtgttaaatacataaatcacaaactaac 45076741  T
Q  152 atttctactttaaacttcttat 173  Q
    |||| |||||||||||||||||    
T  45076740 atttatactttaaacttcttat 45076719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 173
Target Start/End: Complemental strand, 35365310 - 35365191
Alignment:
Q  54 tgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaat 153  Q
    ||||||||||  ||||||| |||||||||||| ||||||| || |||| |||| ||||||||| || |||||| | |||| |||||||| ||||  ||||    
T  35365310 tgttaaagataaaaaaatggaaacaattgataactttcatttaaaaaacgttgttttttgatgattgaatgtgatgaatatacaaatccaaaaaagaaat 35365211  T
Q  154 ttctactttaaacttcttat 173  Q
    || ||||||||| |||||||    
T  35365210 ttatactttaaatttcttat 35365191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 26554199 - 26554284
Alignment:
Q  53 ttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaat 140  Q
    ||||||| |||||||||||| |||  ||||||  ||| |||||||||||||||| |||||||||||||||||| || |||||||||||    
T  26554199 ttgttaatgatttaaaaatggaaattattgat--cttacatgtagaaaaagttgttttttgatgtttcaatgtattgaatacacaaat 26554284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 68 - 203
Target Start/End: Complemental strand, 54457575 - 54457440
Alignment:
Q  68 aaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaact 167  Q
    |||||||||||| ||||| ||||  |||||||| |||||||||||||| |||||||||||| |||||| ||||   || ||||| ||| || ||||| ||    
T  54457575 aaatgaaaacaactgataactttgttgtagaaagagttgctttttgatatttcaatgtgttgaatacataaattttaagataaattttttattttaatct 54457476  T
Q  168 tcttataaagggcccttagggaacttgctagcattt 203  Q
    |||||| ||| || || || | ||||| ||||||||    
T  54457475 tcttattaagtgctctaagagcacttgttagcattt 54457440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 74 - 207
Target Start/End: Complemental strand, 43767384 - 43767251
Alignment:
Q  74 aaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttat 173  Q
    ||||||||||||  ||| ||||||||||| || ||||||||||||| |||||||| ||| |||||||  ||| | |||||||  | ||||||| ||||||    
T  43767384 aaacaattgataaattttatgtagaaaaaattactttttgatgttttaatgtgttgaatgcacaaatttcaagacaaaattttcattttaaacctcttat 43767285  T
Q  174 aaagggcccttagggaacttgctagcatttccct 207  Q
     ||  ||||| |||| ||||| || |||||||||    
T  43767284 caattgccctaagggcacttgttaacatttccct 43767251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 24487878 - 24487775
Alignment:
Q  26 tcttgctaacaagtgcctttatggcatttgttaaagatttaaaaatga-aaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatg 124  Q
    ||||| ||||||||||| ||| |||| ||||||| |||| |||||  | |||||||||||| |||| ||||||||||||||  |||||||||||| |||     
T  24487878 tcttgttaacaagtgcccttagggcacttgttaatgattcaaaaaatagaaacaattgataacttttatgtagaaaaagttaatttttgatgttttaata 24487779  T
Q  125 tgtt 128  Q
    ||||    
T  24487778 tgtt 24487775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 172
Target Start/End: Original strand, 29577243 - 29577386
Alignment:
Q  29 tgctaacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgtt 128  Q
    |||||||| ||||| ||| |||||| ||||| |||||||||| | ||||||||| ||  ||| ||||||||||| || ||||||||| ||||||   ||     
T  29577243 tgctaacaggtgcccttagggcattagttaaggatttaaaaaaggaaacaattgctaaattttatgtagaaaaaattactttttgatatttcaagaagtc 29577342  T
Q  129 caatacacaaatcccaaaataaaatttctactttaaacttctta 172  Q
     ||||||||| |  ||| ||||| |||||||||| || ||||||    
T  29577343 aaatacacaattttcaagataaagtttctacttttaatttctta 29577386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 170
Target Start/End: Original strand, 23512734 - 23512851
Alignment:
Q  53 ttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaa 152  Q
    ||||||||||||  |||||  ||| |||||| |  ||| ||| |||||| ||| ||||||| ||||||||||| || ||| ||||| |||||| ||||||    
T  23512734 ttgttaaagattccaaaatagaaataattgacaaattttatggagaaaatgttactttttgttgtttcaatgtcttgaatgcacaattcccaagataaaa 23512833  T
Q  153 tttctactttaaacttct 170  Q
    ||| ||||||||| ||||    
T  23512834 tttttactttaaatttct 23512851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 25985487 - 25985399
Alignment:
Q  52 tttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaat 140  Q
    |||||||| |||||||||||  ||| |||||||| |||| || |||||||||||| ||||| ||||||| || |||| |||||| ||||    
T  25985487 tttgttaaggatttaaaaatagaaataattgataacttttatatagaaaaagttgttttttaatgtttcgatatgttgaatacaaaaat 25985399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 173
Target Start/End: Original strand, 35220433 - 35220508
Alignment:
Q  98 aaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttat 173  Q
    ||||| ||||||||||||||||||| || || |||||| |||||  || |||||||||| |||| |||||||||||    
T  35220433 aaaaaattgctttttgatgtttcaaagttttgaatacataaatcttaagataaaatttccacttcaaacttcttat 35220508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 173
Target Start/End: Original strand, 42461318 - 42461417
Alignment:
Q  74 aaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttat 173  Q
    |||||||||||| |||| ||||| ||||| || |||||  ||||||||||||||| |||| |||||||  || ||||| |||  ||||||||||| ||||    
T  42461318 aaacaattgataacttttatgtaaaaaaaattacttttatatgtttcaatgtgttgaatatacaaatcttaagataaatttttcactttaaactttttat 42461417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 31596290 - 31596224
Alignment:
Q  118 ttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttataaagggccctt 184  Q
    ||||||||||| ||||||||| ||||||  ||||||| | |||||||||||||||| ||| ||||||    
T  31596290 ttcaatgtgttgaatacacaattcccaaggtaaaattgccactttaaacttcttatcaagtgccctt 31596224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 173
Target Start/End: Complemental strand, 44765220 - 44765100
Alignment:
Q  53 ttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttg-ctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaa 151  Q
    ||||||| ||||||||||| |||| |||| ||| |||| ||||||||||| |||  ||| | |||||| |||||||| |||||||||||   | |||| |    
T  44765220 ttgttaaggatttaaaaataaaaataattaataacttttatgtagaaaaaattgtgtttcttatgtttgaatgtgttgaatacacaaat-ttacaataga 44765122  T
Q  152 atttctactttaaacttcttat 173  Q
     ||| |||||||||||||||||    
T  44765121 ctttttactttaaacttcttat 44765100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 176
Target Start/End: Complemental strand, 47077751 - 47077651
Alignment:
Q  78 aattgatagctttcatgtagaaaaagt--tgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttataa 175  Q
    |||||||| ||||||||| |||||| |  |  ||||| || ||| ||| |||| ||||||||||| | |||||||||||| |||||||||||| ||||||    
T  47077751 aattgataactttcatgttgaaaaaatattttttttttatattttaatatgttaaatacacaaattcaaaaataaaatttttactttaaactttttataa 47077652  T
Q  176 a 176  Q
    |    
T  47077651 a 47077651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 210
Target Start/End: Complemental strand, 50173498 - 50173317
Alignment:
Q  29 tgctaacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgtt 128  Q
    |||||||||||||| ||| | || | ||||| |||| ||||| | ||||||||| ||  ||| |||| |||| |||||||||||| | |||||||  ||     
T  50173498 tgctaacaagtgcccttaggacactagttaaggattcaaaaaaggaaacaattgctaaattttatgttgaaagagttgctttttggtatttcaataagtc 50173399  T
Q  129 caatacacaaatcccaaaataaaatttctactttaaacttcttataaagggcccttagggaacttgctagcatttcccttat 210  Q
     ||||||||| | |||| |||||  ||||||||| |  ||||||   || ||||| | || ||||| |||||||||||||||    
T  50173398 aaatacacaatttccaagataaagattctacttttagtttcttaactagtgccctaaaggcacttgttagcatttcccttat 50173317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 19791103 - 19791023
Alignment:
Q  48 ggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgtt 128  Q
    |||| |||||||||||| |||||||| |||||||  || |||| ||||| |||| |||||||||| ||  |||||||||||    
T  19791103 ggcacttgttaaagattcaaaaatgacaacaattattaacttttatgtataaaaggttgctttttaataattcaatgtgtt 19791023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 170
Target Start/End: Complemental strand, 31375577 - 31375499
Alignment:
Q  92 atgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttct 170  Q
    |||||||||| ||| |||||| | ||||||||||||| ||||||||| | |||| | |||||||||  |||| ||||||    
T  31375577 atgtagaaaatgttcctttttaaagtttcaatgtgttgaatacacaatttccaagaaaaaatttcttatttagacttct 31375499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 51723304 - 51723218
Alignment:
Q  87 ctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttat 173  Q
    |||| ||||||||||  ||||||||||  ||||||| ||||| || | |||||| |||||| || |||| | |||||||||||||||    
T  51723304 cttttatgtagaaaatattgctttttgcagtttcaacgtgttgaacatacaaattccaaaaaaatatttatgctttaaacttcttat 51723218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 15985387 - 15985238
Alignment:
Q  24 ggtcttgctaacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaat 123  Q
    ||||||||||||||||||| | | | || | |||||||||| ||||| | ||| ||||||||  ||| ||||  ||||| || |||||| || |||||||    
T  15985387 ggtcttgctaacaagtgccctaaggacactggttaaagattcaaaaaaggaaataattgataaattttatgttaaaaaaattactttttaatatttcaat 15985288  T
Q  124 gtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttat 173  Q
    ||||| ||| | ||| | || | |||||  ||  ||||||||||||||||    
T  15985287 gtgttgaatgctcaacttcccatataaacctttcactttaaacttcttat 15985238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 16053325 - 16053390
Alignment:
Q  25 gtcttgctaacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgatagcttt 90  Q
    ||||||||||||||||   ||||| || ||||||| |||| ||||||||||||||| |||| ||||    
T  16053325 gtcttgctaacaagtgtgcttatgacacttgttaatgattcaaaaatgaaaacaatcgataacttt 16053390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 16041385 - 16041484
Alignment:
Q  25 gtcttgctaacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatg 124  Q
    ||||||||||||||||   |||||  | ||||||| |||| |||||| |||||||| |||| |||| ||||| || |||||| ||||| || ||||||||    
T  16041385 gtcttgctaacaagtgtgcttatgaaacttgttaatgattgaaaaataaaaacaatcgataacttttatgta-aataagttgtttttttatatttcaatg 16041483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 165
Target Start/End: Original strand, 34004756 - 34004873
Alignment:
Q  48 ggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaa 147  Q
    |||| ||||||| ||||||||| ||||||||||||| | ||||||||||||||||||||  ||| ||||||||||||||||  |||||||||| |||| |    
T  34004756 ggcacttgttaaggatttaaaattgaaaacaattgaaatctttcatgtagaaaaagttgtctttggatgtttcaatgtgttgcatacacaaattccaaga 34004855  T
Q  148 taaaatttctactttaaa 165  Q
    |||| |||| | ||||||    
T  34004856 taaattttccattttaaa 34004873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 155
Target Start/End: Complemental strand, 24423554 - 24423447
Alignment:
Q  48 ggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaa 147  Q
    |||||||||||| |||| | ||||| ||||||| |||  |||||||||||||||||||| |||||| |||||||||||||| |||||| ||||| ||| |    
T  24423554 ggcatttgttaaggattaataaatggaaacaatcgatgactttcatgtagaaaaagttgttttttggtgtttcaatgtgttgaatacataaatctcaaga 24423455  T
Q  148 taaaattt 155  Q
    ||||||||    
T  24423454 taaaattt 24423447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 30424964 - 30424883
Alignment:
Q  47 tggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgtt 128  Q
    ||||||||||||| |||  ||||||| ||||||||| || ||||||||||||||||||| ||||||||||||||||||||||    
T  30424964 tggcatttgttaaggataaaaaaatggaaacaattgctaactttcatgtagaaaaagtttctttttgatgtttcaatgtgtt 30424883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 177
Target Start/End: Original strand, 6707589 - 6707712
Alignment:
Q  53 ttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaa 152  Q
    |||||||  ||||||||||| || ||||||||| |||||||||| ||||||||  ||||| |||||| |||||||| |||||| ||||   ||  |||||    
T  6707589 ttgttaagtatttaaaaatggaagcaattgataactttcatgta-aaaaagttattttttaatgttttaatgtgttgaatacataaatattaaggtaaaa 6707687  T
Q  153 tttctactttaaacttcttataaag 177  Q
    |||||||||||||||||||||||||    
T  6707688 tttctactttaaacttcttataaag 6707712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 174
Target Start/End: Original strand, 11663021 - 11663120
Alignment:
Q  74 aaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttat 173  Q
    |||||||||||| ||||||||||||||| ||||||||| |||||||||||||||| ||||||| | |   || |||||||||| |||||||| |||||||    
T  11663021 aaacaattgataactttcatgtagaaaacgttgcttttcgatgtttcaatgtgttaaatacac-atttttaagataaaatttccactttaaatttcttat 11663119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 155
Target Start/End: Complemental strand, 7711996 - 7711891
Alignment:
Q  50 catttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaata 149  Q
    |||||||| | ||||||||||| |||| |||||| | |||| ||||||| ||| ||| |||||||||||||||||| || ||||||||||||  || |||    
T  7711996 catttgttgaggatttaaaaataaaaataattgagaacttttatgtagagaaaattgttttttgatgtttcaatgtcttaaatacacaaatctgaagata 7711897  T
Q  150 aaattt 155  Q
    ||||||    
T  7711896 aaattt 7711891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 36586824 - 36586893
Alignment:
Q  50 catttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgttt 119  Q
    |||||||||||||| |||||||||||| |||||||| |||||||||||| ||||||| ||||||| ||||    
T  36586824 catttgttaaagatctaaaaatgaaaataattgataactttcatgtagataaagttgttttttgacgttt 36586893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 29 - 208
Target Start/End: Original strand, 28197984 - 28198163
Alignment:
Q  29 tgctaacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgtt 128  Q
    |||||||||||||| |||  ||| ||||||| |||| ||||  | ||| |||| |||   || |||||||||||||| |||||||| |||||||||| ||    
T  28197984 tgctaacaagtgcccttagtgcacttgttaaggattcaaaagaggaaataatttataaaatttatgtagaaaaagtttctttttgaagtttcaatgtctt 28198083  T
Q  129 caatacacaaatcccaaaataaaatttctactttaaacttcttataaagggcccttagggaacttgctagcatttccctt 208  Q
     ||||||||| | |||| | ||| ||||| ||||  |||||| |  ||| |||||| ||| ||||| |||||||||||||    
T  28198084 gaatacacaatttccaagaaaaagtttcttctttggacttctaaacaagtgcccttggggcacttgttagcatttccctt 28198163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 173
Target Start/End: Original strand, 3237308 - 3237406
Alignment:
Q  75 aacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttat 173  Q
    ||||||||||| |||||||||| ||||| ||||| ||||||||||||||  ||| ||||||||||  |||| |||||||||  | ||||||||| ||||    
T  3237308 aacaattgataactttcatgtaaaaaaaattgctctttgatgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaactttttat 3237406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 170
Target Start/End: Complemental strand, 8903076 - 8902958
Alignment:
Q  53 ttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgct-ttttgatgtttcaatgtgttcaatacacaaatcccaaaataaa 151  Q
    |||||||||||| |||||| ||||||||||||| |||| || || | ||||||||| |||| ||| ||||||  ||| ||||||||||| | ||||||||    
T  8903076 ttgttaaagattcaaaaataaaaacaattgataacttttatataaataaagttgcttttttaatgcttcaatacgttaaatacacaaattctaaaataaa 8902977  T
Q  152 atttctactttaaacttct 170  Q
    |||| || ||| |||||||    
T  8902976 atttttaatttcaacttct 8902958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 75 - 168
Target Start/End: Complemental strand, 39258955 - 39258863
Alignment:
Q  75 aacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaactt 168  Q
    ||||||||||| ||||||| |||||||||||  |||||||||||| ||| || | |||||||||||  |||||||||||||| | |||||||||    
T  39258955 aacaattgataactttcatatagaaaaagttattttttgatgtttgaatatg-tgaatacacaaatttcaaaataaaatttccattttaaactt 39258863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 66 - 158
Target Start/End: Complemental strand, 43639061 - 43638968
Alignment:
Q  66 aaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttg-atgtttcaatgtgttcaatacacaaatcccaaaataaaatttcta 158  Q
    |||||||  ||||||||||| |||| ||||||||||||||  |||||  |||||||||| | || |||||||||||| ||||||||||||||||    
T  43639061 aaaaatggtaacaattgataacttttatgtagaaaaagttattttttttatgtttcaatatattgaatacacaaatctcaaaataaaatttcta 43638968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 122
Target Start/End: Original strand, 22329570 - 22329640
Alignment:
Q  52 tttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaa 122  Q
    ||||||||||||  ||||||| |||||||| ||| |||  ||||||||||||||| |||||||||||||||    
T  22329570 tttgttaaagatacaaaaatggaaacaatttataacttatatgtagaaaaagttgttttttgatgtttcaa 22329640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 47188535 - 47188459
Alignment:
Q  52 tttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgtt 128  Q
    |||||||| |||| ||||||  |||||||| ||| |||| |||||||||||||| ||||||||| ||| ||||||||    
T  47188535 tttgttaaggattcaaaaatagaaacaattaataacttttatgtagaaaaagttactttttgatattttaatgtgtt 47188459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 173
Target Start/End: Complemental strand, 7399903 - 7399828
Alignment:
Q  98 aaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttat 173  Q
    |||||||| |||||| ||||||||||||||| |||| |||| | |||| |||||  ||| ||||||||||||||||    
T  7399903 aaaaagttactttttaatgtttcaatgtgttgaataaacaacttccaagataaaccttccactttaaacttcttat 7399828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 1799593 - 1799537
Alignment:
Q  117 tttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttat 173  Q
    |||||||||||| |||| |||| | ||||||||||||||  ||||||||||||||||    
T  1799593 tttcaatgtgttgaatatacaacttccaaaataaaatttacactttaaacttcttat 1799537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 7711720 - 7711617
Alignment:
Q  22 agggtcttgctaacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttca 121  Q
    |||||||||||||| | |  |||||||  |||||||||| ||||||||||| ||| |||||||| |||||||| | || |||||| ||||| |||||  |    
T  7711720 agggtcttgctaactatt--ctttatgtaatttgttaaatatttaaaaatggaaataattgataactttcatg-ataataagttgttttttaatgttgaa 7711624  T
Q  122 atgtgtt 128  Q
    |||||||    
T  7711623 atgtgtt 7711617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 35116974 - 35116887
Alignment:
Q  53 ttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaat 140  Q
    ||||||| |||| ||||| | ||| |||| |||  ||| ||||||||||| || |||||||| |||||||||| || |||||||||||    
T  35116974 ttgttaaggattcaaaaaaggaaataatttataaattttatgtagaaaaatttcctttttgaagtttcaatgtattgaatacacaaat 35116887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 32064205 - 32064266
Alignment:
Q  24 ggtcttgctaacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgata 85  Q
    |||||||||||| ||||||||||   || |||||||||||  |||| |||||||||||||||    
T  32064205 ggtcttgctaacgagtgcctttaaaacacttgttaaagatacaaaactgaaaacaattgata 32064266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 7728540 - 7728604
Alignment:
Q  21 aagggtcttgctaacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgata 85  Q
    ||||||||||||||||||| || ||| |||||||| ||| |||  |||||| |||| ||||||||    
T  7728540 aagggtcttgctaacaagtacccttagggcatttgataaggatacaaaaataaaaataattgata 7728604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 7936075 - 7936027
Alignment:
Q  108 tttttgatgtttcaatgtgttcaatacacaaatcccaaaataaaatttc 156  Q
    ||||||| ||||||||||||| ||||||||| |||||||| ||| ||||    
T  7936075 tttttgaagtttcaatgtgttgaatacacaattcccaaaaaaaagtttc 7936027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 12837898 - 12837970
Alignment:
Q  53 ttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgt 125  Q
    ||||||| |||| || |||  ||||||||||||  ||| |||||||  |||||||||||| ||||||||||||    
T  12837898 ttgttaaggattcaagaatagaaacaattgataaattttatgtagattaagttgctttttaatgtttcaatgt 12837970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 46096878 - 46096818
Alignment:
Q  25 gtcttgctaacaagtgcctttatggcatttgttaaagatttaaaaatgaaaacaattgata 85  Q
    |||||||||||||||| ||||| |||   ||||||||||  ||||||||||| ||||||||    
T  46096878 gtcttgctaacaagtgtctttagggcgcatgttaaagatacaaaaatgaaaataattgata 46096818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 49119559 - 49119683
Alignment:
Q  48 ggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatgtgttcaatacacaaatcccaaaa 147  Q
    |||| |||||||||| | ||||| | ||||||||| ||  |||  ||||||| |||||||||||| || ||||||| |||| || ||||||   |||| |    
T  49119559 ggcacttgttaaagaataaaaaaaggaaacaattgctaaattttttgtagaataagttgctttttaatttttcaatatgttgaaaacacaatatccaaga 49119658  T
Q  148 taaaatttctactttaaacttctta 172  Q
     ||| |||||||||| | |||||||    
T  49119659 caaagtttctactttgagcttctta 49119683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 29749 - 29828
Alignment:
Q  114 atgtttcaatgtgttcaatacacaaatcccaaaataaaatttctactttaaacttcttataaagggcccttagggaactt 193  Q
    ||||||||||||||| ||||||| ||| |||| |||||||||||||||| ||||| |||| ||| ||||| |||| ||||    
T  29749 atgtttcaatgtgttgaatacacgaattccaagataaaatttctactttcaactttttatcaagtgccctaagggcactt 29828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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