View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16950_low_2 (Length: 802)

Name: NF16950_low_2
Description: NF16950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16950_low_2
NF16950_low_2
[»] chr7 (9 HSPs)
chr7 (226-784)||(32909946-32910500)
chr7 (226-456)||(32932122-32932352)
chr7 (19-165)||(32910578-32910724)
chr7 (226-371)||(32921744-32921889)
chr7 (226-425)||(32940381-32940580)
chr7 (227-328)||(32897449-32897550)
chr7 (525-633)||(32931978-32932086)
chr7 (50-131)||(32910612-32910693)
chr7 (50-125)||(35880145-35880219)
[»] chr4 (2 HSPs)
chr4 (226-371)||(11822264-11822409)
chr4 (73-129)||(45121171-45121227)
[»] chr2 (4 HSPs)
chr2 (73-131)||(4931585-4931643)
chr2 (50-108)||(4931585-4931643)
chr2 (66-128)||(37300003-37300065)
chr2 (66-116)||(4980336-4980386)
[»] chr8 (1 HSPs)
chr8 (51-131)||(26901484-26901564)
[»] scaffold0024 (2 HSPs)
scaffold0024 (66-114)||(132627-132675)
scaffold0024 (72-127)||(142177-142232)
[»] chr6 (2 HSPs)
chr6 (50-133)||(2511405-2511488)
chr6 (50-131)||(2511407-2511488)
[»] chr5 (3 HSPs)
chr5 (38-116)||(6965315-6965394)
chr5 (68-131)||(29919368-29919431)
chr5 (51-129)||(8610329-8610407)
[»] chr1 (1 HSPs)
chr1 (66-115)||(46170410-46170459)


Alignment Details
Target: chr7 (Bit Score: 514; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 226 - 784
Target Start/End: Complemental strand, 32910500 - 32909946
Alignment:
Q  226 ctcaacatctttgccaatatgaagaagatctaagttctgatcaaaatgataaacatgaatacggctaccagtgctaccagcatcaaacacgacagcataa 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32910500 ctcaacatctttgccaatatgaagaagatctaagttctgatcaaaatggtaaacatgaatacggctaccagtgctaccagcatcaaacacgacagcataa 32910401  T
Q  326 gaggaaattgtttcttgttgttggaaaatctttcgattagtgagtaggttgtttcctaaatattgtgaggaagtgattgcaggcattaacaagagtagaa 425  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32910400 gaggaaattgtttcttgtttttggaaaatctttcgattagtgagtaggttgtttcctaaatattgtgaggaagtgattgcaggcattaacaagagtagaa 32910301  T
Q  426 cagtggtgattagtgtaattaggaactccataatcttaattttttggactgagcaaaataattctgaaattggtcacaggttaattaaccagcttaatta 525  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  32910300 cagtggtgattagtgtaattaggaactccataatcttaattttttggactgagcaaaataattctgaaattggtcacaggttaattaaccagcttaatca 32910201  T
Q  526 tgtgtttgtcataattcacaacccactatgtataactggaaaaagtgaagatcaattaattatttaaaagacacgattaactggcgttttctttctctta 625  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32910200 tgtgtttgtcataattcacaacccactatgtataactggaaaaggtgaagatcaattaattatttaaaagacacgattaacttgcgttttctttctctta 32910101  T
Q  626 aattatgttatatgccgctgttaaaggtggactaattaatgacattgtggcatgggtgctctaattattatactacttagtatcttaatcttgatcgaat 725  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    |||||||||||||||||||||||    
T  32910100 aattatgttatatgccgctgttaaaggtggactaattaatgacattgtggcattggtgctctaattattatac----tagtatcttaatcttgatcgaat 32910005  T
Q  726 caacacgttgtttaaatgtggcacaatatatggcaaggacacaaaatattactacaatt 784  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32910004 caacacattgtttaaatgtggcacaatatatggcaaggacacaaaatattactacaatt 32909946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 226 - 456
Target Start/End: Complemental strand, 32932352 - 32932122
Alignment:
Q  226 ctcaacatctttgccaatatgaagaagatctaagttctgatcaaaatgataaacatgaatacggctaccagtgctaccagcatcaaacacgacagcataa 325  Q
    ||||| ||| |||||||| |||||||||||||||||||| |||||||| |||||||| | |||  |||||||||||||||||||||| | |||||| |||    
T  32932352 ctcaatatcattgccaatgtgaagaagatctaagttctggtcaaaatggtaaacatggacacgagtaccagtgctaccagcatcaaatatgacagcgtaa 32932253  T
Q  326 gaggaaattgtttcttgttgttggaaaatctttcgattagtgagtaggttgtttcctaaatattgtgaggaagtgattgcaggcattaacaagagtagaa 425  Q
    || |  |  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  32932252 gatgttaaggtttcttgtttttggaaaatctttcgattagtgagtaggttgtttcctaaatattgggaggaagtgattgcaggcattaacaagagtaaaa 32932153  T
Q  426 cagtggtgattagtgtaattaggaactccat 456  Q
     |||||| || ||||||||||||||||||||    
T  32932152 aagtggtaatgagtgtaattaggaactccat 32932122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 32910724 - 32910578
Alignment:
Q  19 atgaatacatttacatatatatactccctccatcttaaatataatcgaaaagtcaaatgtatttgatttaaatttgaaccatatacatttgactttttta 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| ||||||||||||||||||    
T  32910724 atgaatacatttacatatatatactccctccatcttaaatataatcaaaaagtcaaatatatttgatttaaatttggaccaaatacatttgactttttta 32910625  T
Q  119 ttatatttaagattgcagggagtaacttcatagtaatcaagaagaac 165  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||    
T  32910624 ttatatttaagatcgtagggagtaacttcatagtaatcaagaagaac 32910578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 226 - 371
Target Start/End: Complemental strand, 32921889 - 32921744
Alignment:
Q  226 ctcaacatctttgccaatatgaagaagatctaagttctgatcaaaatgataaacatgaatacggctaccagtgctaccagcatcaaacacgacagcataa 325  Q
    |||||||||||| |||| ||||||||||| |||||| ||||||||||| |||||||| | |||||| ||||||||||||||||||||||| |||||||||    
T  32921889 ctcaacatctttaccaacatgaagaagatttaagttttgatcaaaatggtaaacatggacacggcttccagtgctaccagcatcaaacacaacagcataa 32921790  T
Q  326 gaggaaattgtttcttgttgttggaaaatctttcgattagtgagta 371  Q
    |||||||||| |||||||| | |||||||||| || ||||||||||    
T  32921789 gaggaaattggttcttgttttgggaaaatcttacggttagtgagta 32921744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 226 - 425
Target Start/End: Complemental strand, 32940580 - 32940381
Alignment:
Q  226 ctcaacatctttgccaatatgaagaagatctaagttctgatcaaaatgataaacatgaatacggctaccagtgctaccagcatcaaacacgacagcataa 325  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||| ||||||||| ||||||||||||||||| |||||||| ||     
T  32940580 ctcaacatcgttgccaatgtgaagaagatctaagttctgatcaaaatggtagacatgaacacggctaccggtgctaccagcatcaaagacgacagcgtac 32940481  T
Q  326 gaggaaattgtttcttgttgttggaaa-atctttcgattagtgagtaggttgtttcctaaatattgtgaggaagtgattgcaggcattaacaagagtaga 424  Q
    ||||  |  |||||||||| ||||||| || || ||||| |||||||  |||||||| | |||||| ||||||| ||||| |||||| || |||||||||    
T  32940480 gaggttagagtttcttgtt-ttggaaatattttacgattggtgagtatattgtttccaagatattgggaggaagagattgtaggcatcaagaagagtaga 32940382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 227 - 328
Target Start/End: Complemental strand, 32897550 - 32897449
Alignment:
Q  227 tcaacatctttgccaatatgaagaagatctaagttctgatcaaaatgataaacatgaatacggctaccagtgctaccagcatcaaacacgacagcataag 326  Q
    |||| |||||||||||| |||| ||||||||| ||||||||||||||| ||||||||| ||||||||||| ||||||||||||||| |  ||||||||||    
T  32897550 tcaagatctttgccaatgtgaacaagatctaaattctgatcaaaatgaaaaacatgaacacggctaccagagctaccagcatcaaaaataacagcataag 32897451  T
Q  327 ag 328  Q
    ||    
T  32897450 ag 32897449  T

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Target: chr7; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 525 - 633
Target Start/End: Complemental strand, 32932086 - 32931978
Alignment:
Q  525 atgtgtttgtcataattcacaacccactatgtataactggaaaaagtgaagatcaattaattatttaaaagacacgattaactggcgttttctttctctt 624  Q
    ||||||| || || |||||||| ||||||||||||| |||||||||||||||| || |||| |||||| | ||  ||||| || | ||||||||||||||    
T  32932086 atgtgttggttatgattcacaatccactatgtataaatggaaaaagtgaagatgaaataataatttaagaaacgtgattatctcgtgttttctttctctt 32931987  T
Q  625 aaattatgt 633  Q
    |||||||||    
T  32931986 aaattatgt 32931978  T

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Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 131
Target Start/End: Original strand, 32910612 - 32910693
Alignment:
Q  50 atcttaaatataatcgaaaagtcaaatgtatttgatttaaatttgaaccatatacatttgacttttttattatatttaagat 131  Q
    ||||||||||||||  |||||||||||||||||| |  |||||| || || ||| |||||||||||| ||||||||||||||    
T  32910612 atcttaaatataataaaaaagtcaaatgtatttggtccaaatttaaatcaaatatatttgactttttgattatatttaagat 32910693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 35880145 - 35880219
Alignment:
Q  50 atcttaaatataatcgaaaagtcaaatgtatttgatttaaatttgaaccatatacatttgacttttttattatatt 125  Q
    ||||||||||||| | |||||||||||   ||||||||||||||| |||| ||| |||||| |||||| |||||||    
T  35880145 atcttaaatataaacaaaaagtcaaatacgtttgatttaaatttggaccaaatatatttga-ttttttcttatatt 35880219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 4e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 226 - 371
Target Start/End: Complemental strand, 11822409 - 11822264
Alignment:
Q  226 ctcaacatctttgccaatatgaagaagatctaagttctgatcaaaatgataaacatgaatacggctaccagtgctaccagcatcaaacacgacagcataa 325  Q
    |||||||||||| |||| ||||||||||| |||||| ||||||||||| |||||||| | |||||| ||||||||||||||||||||||| ||||| |||    
T  11822409 ctcaacatctttaccaacatgaagaagatttaagttttgatcaaaatggtaaacatggacacggcttccagtgctaccagcatcaaacacaacagcgtaa 11822310  T
Q  326 gaggaaattgtttcttgttgttggaaaatctttcgattagtgagta 371  Q
    ||||||||||||||||||| | |||||||||| || ||||||||||    
T  11822309 gaggaaattgtttcttgttttgggaaaatcttacggttagtgagta 11822264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 45121171 - 45121227
Alignment:
Q  73 aaatgtatttgatttaaatttgaaccatatacatttgacttttttattatatttaag 129  Q
    |||||||||||||||||||||| || | ||||||||||||||||  |||||||||||    
T  45121171 aaatgtatttgatttaaatttggactaaatacatttgactttttgtttatatttaag 45121227  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 4931585 - 4931643
Alignment:
Q  73 aaatgtatttgatttaaatttgaaccatatacatttgacttttttattatatttaagat 131  Q
    |||||||||||||||||||||||| || ||||||||||||||||  |||||||||||||    
T  4931585 aaatgtatttgatttaaatttgaatcaaatacatttgactttttgtttatatttaagat 4931643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 4931643 - 4931585
Alignment:
Q  50 atcttaaatataatcgaaaagtcaaatgtatttgatttaaatttgaaccatatacattt 108  Q
    ||||||||||||| | ||||||||||||||||||||| |||||| || || ||||||||    
T  4931643 atcttaaatataaacaaaaagtcaaatgtatttgattcaaatttaaatcaaatacattt 4931585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 37300003 - 37300065
Alignment:
Q  66 aaaagtcaaatgtatttgatttaaatttgaaccatatacatttgacttttttattatatttaa 128  Q
    ||||||| |||||||||  || |||||||||||| ||||||||||||||||  ||||||||||    
T  37300003 aaaagtcgaatgtatttagttgaaatttgaaccaaatacatttgactttttatttatatttaa 37300065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 4980386 - 4980336
Alignment:
Q  66 aaaagtcaaatgtatttgatttaaatttgaaccatatacatttgacttttt 116  Q
    |||| |||| |||||||||| ||||||||| | ||||||||||||||||||    
T  4980386 aaaaatcaattgtatttgatctaaatttgagctatatacatttgacttttt 4980336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 51 - 131
Target Start/End: Original strand, 26901484 - 26901564
Alignment:
Q  51 tcttaaatataatcgaaaagtcaaatgtatttgatttaaatttgaaccatatacatttgacttttttattatatttaagat 131  Q
    |||||||||||  | |||||||||||||||||||||||||||||||| | |||||||| ||||| |   ||||||||||||    
T  26901484 tcttaaatatatacaaaaagtcaaatgtatttgatttaaatttgaacaaaatacatttaactttgtgcatatatttaagat 26901564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 132675 - 132627
Alignment:
Q  66 aaaagtcaaatgtatttgatttaaatttgaaccatatacatttgacttt 114  Q
    |||||||||||||||||| |||||| ||| |||| ||||||||||||||    
T  132675 aaaagtcaaatgtatttggtttaaagttggaccaaatacatttgacttt 132627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 142177 - 142232
Alignment:
Q  72 caaatgtatttgatttaaatttgaaccatatacatttgacttttttattatattta 127  Q
    ||||||||||||||| |||||| ||||| |||||||||||| |||| || ||||||    
T  142177 caaatgtatttgattcaaatttaaaccaaatacatttgactctttttttttattta 142232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 2511488 - 2511405
Alignment:
Q  50 atcttaaatataatcgaaaagtcaaatgtatttgatttaaatttgaaccatatacatttgacttttttattatatttaagattg 133  Q
    ||||||||| ||| | |||||||||||||||||||| ||||||| ||  | | ||||||||| ||||   ||||||||||||||    
T  2511488 atcttaaatctaaacaaaaagtcaaatgtatttgatctaaatttaaataaaaaacatttgaccttttgtatatatttaagattg 2511405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 131
Target Start/End: Original strand, 2511407 - 2511488
Alignment:
Q  50 atcttaaatataatcgaaaagtcaaatgtatttgatttaaatttgaaccatatacatttgacttttttattatatttaagat 131  Q
    ||||||||||||  | ||| ||||||||| ||| ||||||||||  | || ||||||||||||||||  ||| |||||||||    
T  2511407 atcttaaatatatacaaaaggtcaaatgttttttatttaaatttagatcaaatacatttgactttttgtttagatttaagat 2511488  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 6965315 - 6965394
Alignment:
Q  38 tatactccctcca-tcttaaatataatcgaaaagtcaaatgtatttgatttaaatttgaaccatatacatttgacttttt 116  Q
    ||||||||||| | ||||| || ||| | ||||||||||||||||| ||| ||||||| |||| |||||||||| |||||    
T  6965315 tatactccctcgagtcttatatttaagcaaaaagtcaaatgtatttaattcaaatttggaccaaatacatttgatttttt 6965394  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 29919368 - 29919431
Alignment:
Q  68 aagtcaaatgtatttgatttaaatttgaaccatatacatttgacttttttattatatttaagat 131  Q
    |||||||||||||||| | ||||| ||||||| |||||||| |||||||  ||| |||||||||    
T  29919368 aagtcaaatgtatttgttctaaatatgaaccaaatacattttactttttacttaaatttaagat 29919431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 8610329 - 8610407
Alignment:
Q  51 tcttaaatataatcgaaaagtcaaatgtatttgatttaaatttgaaccatatacatttgacttttttattatatttaag 129  Q
    |||||||||||  | |||||||||||| |||| || |||||||  |||| ||||||||| ||||||  |||||||||||    
T  8610329 tcttaaatatacacaaaaagtcaaatggatttaatctaaatttataccaaatacatttgtctttttgcttatatttaag 8610407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 46170410 - 46170459
Alignment:
Q  66 aaaagtcaaatgtatttgatttaaatttgaaccatatacatttgactttt 115  Q
    ||||||||||||||||| || |||||||| |||| |||||||| ||||||    
T  46170410 aaaagtcaaatgtatttaatctaaatttggaccaaatacattttactttt 46170459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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