View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16950_low_23 (Length: 308)
Name: NF16950_low_23
Description: NF16950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16950_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 292
Target Start/End: Original strand, 52972581 - 52972850
Alignment:
| Q |
20 |
atacctgcgtatcgctcctttatgggaagatttaaacatcatctagaaacaggaagacatattgacaagtacataaagtatcatcccgacgacattgaga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52972581 |
atacctgcgtatcgctcctttatgggaagatttaaacatcatctagaaacaggaagacatattgacaagtacataaagtatcatcccgacgacattgaga |
52972680 |
T |
|
| Q |
120 |
cattgattgacgannnnnnngtcggaaatgttacgtccatgcctcgaaggaggacatgaaactcatcacttatttccttttatttttatgagatgagaat |
219 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
52972681 |
cattgattgacgatttttttgttggaaatgttacgtccatgcctcgaaggaggacatgaaactcatcacttatttccttttattttcatgagatgagaat |
52972780 |
T |
|
| Q |
220 |
atgtcatcacactttatatatacgtgtgtgtgtgagttgagtggagataaataccaccataccaccttagtta |
292 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
52972781 |
atgtcatcacactttatatatatgtgtgtgtgtgagttgagtggagataaat---accataccaccttagtta |
52972850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University