View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16950_low_25 (Length: 296)
Name: NF16950_low_25
Description: NF16950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16950_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 279
Target Start/End: Original strand, 53089063 - 53089349
Alignment:
| Q |
10 |
attattctggtaatgtaatgcatatagcatacttatactcgctaaaattcat-----------------catggaacttcttggctagttccctttttcc |
92 |
Q |
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| T |
53089063 |
attattctggtaatgtgatgcatatagcatacttatactcgctaaaattcatacaaactcgtcactcatcatggaacttcttggctagttccctttttcc |
53089162 |
T |
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| Q |
93 |
ttgaaaaaatacctccgataagtggaatcaatgacttcttcttcttcttcctaagagaagggtgcctttccaacttctcaacaccttgaggtaacatcac |
192 |
Q |
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| T |
53089163 |
ttgaaaaaatacctcctataagtggaatcaatgacttcttcttcttcttcctaagagaagggtgcctttccaacttctcaacaccttgaggtaacatcac |
53089262 |
T |
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| Q |
193 |
atgagaaacagacggtggattcgcgaacgtcacataccttttcttttgaaactccatcattaattcttcatcaaatcttgaactttt |
279 |
Q |
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| T |
53089263 |
atgagaaacagacggtggattcgcgaacgtcacataccttttcttttgaaactccatcattaattcttcatcaaatcttgaactttt |
53089349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 56 - 279
Target Start/End: Original strand, 14333826 - 14334058
Alignment:
| Q |
56 |
attcatcatggaacttcttggctagttccctttttccttgaaaaaatacctccgataagtggaatcaatgacttcttcttcttcttcctaagagaagggt |
155 |
Q |
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| T |
14333826 |
attcatcatggaacttcttggttagttccctttttcctagaaaatatgcctccaataagtggaatcaatgacttcttcttcttcttcctaagagaagggt |
14333925 |
T |
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| Q |
156 |
gcctttccaacttctcaac---------accttgaggtaacatcacatgagaaacagacggtggattcgcgaacgtcacataccttttcttttgaaactc |
246 |
Q |
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| T |
14333926 |
gcctttccaacttctcaacaccttgatgaccttgaggtaacatgacatgagaaactgacggtggattcgcgaacgtcacataccttttcttttgaaattc |
14334025 |
T |
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| Q |
247 |
catcattaattcttcatcaaatcttgaactttt |
279 |
Q |
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| T |
14334026 |
catcattaattcttcatcaaatcttgaactttt |
14334058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 14333763 - 14333814
Alignment:
| Q |
10 |
attattctggtaatgtaatgcatatagcatacttatactcgctaaaattcat |
61 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14333763 |
attaatctggtaatgtaatgcatgaagcatacttatactcgctaaaattcat |
14333814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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