View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16950_low_27 (Length: 280)
Name: NF16950_low_27
Description: NF16950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16950_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 25 - 264
Target Start/End: Original strand, 833721 - 833960
Alignment:
| Q |
25 |
aatagacaaataatactattctccaaacatggaacttctgagttcattgacgaaagaagagattttagaagttctatctcatggtttatgtcatcagtgt |
124 |
Q |
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| T |
833721 |
aatagacaaataatactattctccaaacatggaacttctgagttcattgacgaaagaagagattttagaagttctatctcatggtttatgtcatcagtgt |
833820 |
T |
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| Q |
125 |
gaaacccttgtgcatgatcgtatcagaagaacccttcataaaagtaagtaacactcttttcattatgtattatttttagttacgtcgatttaagtttagg |
224 |
Q |
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| T |
833821 |
gaaaccctagggcatgatcgtatcagaagaacccttcataaaagtaagtaacactcttttcattatgtattatttttagttacgtcgatttaagtttagg |
833920 |
T |
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| Q |
225 |
atttagggcttttgagtttttacattgccaatgaatcatg |
264 |
Q |
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| T |
833921 |
atttagggcttttgagtttttacattgccaatgaatcatg |
833960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 43 - 185
Target Start/End: Original strand, 812083 - 812225
Alignment:
| Q |
43 |
ttctccaaacatggaacttctgagttcattgacgaaagaagagattttagaagttctatctcatggtttatgtcatcagtgtgaaacccttgtgcatgat |
142 |
Q |
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| T |
812083 |
ttctccaacaatggaaattttgaattcattgacgaaagaagagattttagaggttctatctcatggtttatgtcaccactgtgaaacccttgttcatgat |
812182 |
T |
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| Q |
143 |
cgtatcagaagaacccttcataaaagtaagtaacactcttttc |
185 |
Q |
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| T |
812183 |
cgtctcataagaatgcctcataaaagtaagtaatactcttttc |
812225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 833673 - 833707
Alignment:
| Q |
7 |
tccaagaatattacaagcaatagacaaataatact |
41 |
Q |
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| T |
833673 |
tccaagaacattacaagcaatagacaaataatact |
833707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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