View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16950_low_33 (Length: 230)
Name: NF16950_low_33
Description: NF16950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16950_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 2443934 - 2444128
Alignment:
| Q |
22 |
ccgacattaatcatgtaactgtcttcgccataaaggcgagcatgatcatgagtaattttcatcctttgaagaatatcgccgacatcttggatgattttta |
121 |
Q |
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| T |
2443934 |
ccgacattaatcatgtaactgtagtcgccataaaggcgagcatgatcatgagtaattttcatcctttgaagaatatcgccgacatcttggatgattttta |
2444033 |
T |
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| Q |
122 |
tgtattggtttaccatggaccccttatcatggtcatccaccttaaaactcacctaggtaatagtaccatattcaagtaactaatttcaccatatt |
216 |
Q |
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| T |
2444034 |
tgtattggtttaccatggaccccttatcaaggtcatccaccttaaaactcacctaggtaatagtaccatatccaagtaactaatttcaccatatt |
2444128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 51 - 216
Target Start/End: Complemental strand, 7424457 - 7424292
Alignment:
| Q |
51 |
ataaaggcgagcatgatcatgagtaattttcatcctttgaagaatatcgccgacatcttggatgatttttatgtattggtttaccatggaccccttatca |
150 |
Q |
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| T |
7424457 |
ataaagacgtgcataatcatgagtaatttttatcttttgaagaatatcgccgacatcttggatgatttttatgtattgatttatcgtggactacttatca |
7424358 |
T |
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| Q |
151 |
tggtcatccaccttaaaactcacctaggtaatagtaccatattcaagtaactaatttcaccatatt |
216 |
Q |
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| T |
7424357 |
aggtcatacaccttaaaactcacctaggtaatactaccatatccaagtaactaatttcatcatatt |
7424292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 51 - 207
Target Start/End: Original strand, 12221145 - 12221302
Alignment:
| Q |
51 |
ataaaggcgagcatgatcatgagtaattttcatccttt-gaagaatatcgccgacatcttggatgatttttatgtattggtttaccatggaccccttatc |
149 |
Q |
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|||||| || |||| ||||||||||||||||||| ||| ||||||||| | |||||||||||||||||||| |||||||||||||| |||||| |||||| |
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| T |
12221145 |
ataaagacgggcataatcatgagtaattttcatctttttgaagaatattgacgacatcttggatgatttttttgtattggtttaccgtggaccacttatc |
12221244 |
T |
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| Q |
150 |
atggtcatccaccttaaaactcacctaggtaatagtaccatattcaagtaactaattt |
207 |
Q |
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| T |
12221245 |
aaggtcatccaccttaaaactcacctaggtaattgtaccatatccaagtaactaattt |
12221302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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