View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16950_low_5 (Length: 575)

Name: NF16950_low_5
Description: NF16950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16950_low_5
NF16950_low_5
[»] chr8 (6 HSPs)
chr8 (310-566)||(20173763-20174019)
chr8 (310-566)||(20218489-20218745)
chr8 (137-269)||(20173590-20173722)
chr8 (137-269)||(20218316-20218448)
chr8 (18-106)||(20173471-20173559)
chr8 (18-106)||(20218197-20218285)
[»] chr7 (3 HSPs)
chr7 (310-566)||(44303001-44303257)
chr7 (137-269)||(44302828-44302960)
chr7 (18-106)||(44302709-44302797)
[»] chr1 (1 HSPs)
chr1 (387-472)||(39651468-39651553)


Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 310 - 566
Target Start/End: Original strand, 20173763 - 20174019
Alignment:
Q  310 tttagatgacctgaacaatgatcagggcagggttgtgattgagaagaatctctacgacacttcttcaagannnnnnngagcttcttgaatccaacctcag 409  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  20173763 tttagatgacctgagcaatgatcagggcagggttgtgattgagaagaatctctacgacacttcttcaagatttttttgagcttcttgaatccaacctcag 20173862  T
Q  410 gaagtttcttctgctcctggccttgcatgtattcctggtattttttgcagaacttcatgttttattataagcaacattaatctactaagatcctatggtt 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20173863 gaagtttcttctgctcctggccttgcatgtattcctggtattttttgcagaacttcatgttttattataagtaacattaatctactaagatcctatggtt 20173962  T
Q  510 ttgtcataagaaactaaagggatgtggacaagaataatgtgattgattcggtctgtg 566  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20173963 ttgtcataagaaactaaagggatgtggacaagaataatgtgattgattcggtttgtg 20174019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 310 - 566
Target Start/End: Original strand, 20218489 - 20218745
Alignment:
Q  310 tttagatgacctgaacaatgatcagggcagggttgtgattgagaagaatctctacgacacttcttcaagannnnnnngagcttcttgaatccaacctcag 409  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  20218489 tttagatgacctgagcaatgatcagggcagggttgtgattgagaagaatctctacgacacttcttcaagatttttttgagcttcttgaatccaacctcag 20218588  T
Q  410 gaagtttcttctgctcctggccttgcatgtattcctggtattttttgcagaacttcatgttttattataagcaacattaatctactaagatcctatggtt 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20218589 gaagtttcttctgctcctggccttgcatgtattcctggtattttttgcagaacttcatgttttattataagtaacattaatctactaagatcctatggtt 20218688  T
Q  510 ttgtcataagaaactaaagggatgtggacaagaataatgtgattgattcggtctgtg 566  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20218689 ttgtcataagaaactaaagggatgtggacaagaataatgtgattgattcggtttgtg 20218745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 137 - 269
Target Start/End: Original strand, 20173590 - 20173722
Alignment:
Q  137 gaaaacagatctatcatattcaataaataaagtcatagaatctagaaacttcaaccgatcatgcatgcaatagaagcaaactcataaaataccctctttg 236  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20173590 gaaaacagatctatcatattcaaaaaataaagtcatagattctagaaacttcaaccgatcatgcatgcaatagaagcaaactcataaaataccctctttg 20173689  T
Q  237 taataattaatgattcaactcagcaaggaagaa 269  Q
    |||||||||||||||||||||||||||||||||    
T  20173690 taataattaatgattcaactcagcaaggaagaa 20173722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 137 - 269
Target Start/End: Original strand, 20218316 - 20218448
Alignment:
Q  137 gaaaacagatctatcatattcaataaataaagtcatagaatctagaaacttcaaccgatcatgcatgcaatagaagcaaactcataaaataccctctttg 236  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20218316 gaaaacagatctatcatattcaaaaaataaagtcatagattctagaaacttcaaccgatcatgcatgcaatagaagcaaactcataaaataccctctttg 20218415  T
Q  237 taataattaatgattcaactcagcaaggaagaa 269  Q
    |||||||||||||||||||||||||||||||||    
T  20218416 taataattaatgattcaactcagcaaggaagaa 20218448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 20173471 - 20173559
Alignment:
Q  18 catcaaatattaaaggtctcagttagttcccatattttctgttttcattttaaattaaactctaaacataagaaaatacagatccaata 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20173471 catcaaatattaaaggtctcagttagttcccatattttctgttttcattttaaattaaactctaaacataagaaaatacagatccaata 20173559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 20218197 - 20218285
Alignment:
Q  18 catcaaatattaaaggtctcagttagttcccatattttctgttttcattttaaattaaactctaaacataagaaaatacagatccaata 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20218197 catcaaatattaaaggtctcagttagttcccatattttctgttttcattttaaattaaactctaaacataagaaaatacagatccaata 20218285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 310 - 566
Target Start/End: Original strand, 44303001 - 44303257
Alignment:
Q  310 tttagatgacctgaacaatgatcagggcagggttgtgattgagaagaatctctacgacacttcttcaagannnnnnngagcttcttgaatccaacctcag 409  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  44303001 tttagatgacctgagcaatgatcagggcagggttgtgattgagaagaatctctacgacacttcttcaagatttttttgagcttcttgaatccaacctcag 44303100  T
Q  410 gaagtttcttctgctcctggccttgcatgtattcctggtattttttgcagaacttcatgttttattataagcaacattaatctactaagatcctatggtt 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44303101 gaagtttcttctgctcctggccttgcatgtattcctggtattttttgcagaacttcatgttttattataagtaacattaatctactaagatcctatggtt 44303200  T
Q  510 ttgtcataagaaactaaagggatgtggacaagaataatgtgattgattcggtctgtg 566  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44303201 ttgtcataagaaactaaagggatgtggacaagaataatgtgattgattcggtttgtg 44303257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 137 - 269
Target Start/End: Original strand, 44302828 - 44302960
Alignment:
Q  137 gaaaacagatctatcatattcaataaataaagtcatagaatctagaaacttcaaccgatcatgcatgcaatagaagcaaactcataaaataccctctttg 236  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44302828 gaaaacagatctatcatattcaaaaaataaagtcatagattctagaaacttcaaccgatcatgcatgcaatagaagcaaactcataaaataccctctttg 44302927  T
Q  237 taataattaatgattcaactcagcaaggaagaa 269  Q
    |||||||||||||||||||||||||||||||||    
T  44302928 taataattaatgattcaactcagcaaggaagaa 44302960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 44302709 - 44302797
Alignment:
Q  18 catcaaatattaaaggtctcagttagttcccatattttctgttttcattttaaattaaactctaaacataagaaaatacagatccaata 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44302709 catcaaatattaaaggtctcagttagttcccatattttctgttttcattttaaattaaactctaaacataagaaaatacagatccaata 44302797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 387 - 472
Target Start/End: Complemental strand, 39651553 - 39651468
Alignment:
Q  387 gagcttcttgaatccaacctcaggaagtttcttctgctcctggccttgcatgtattcctggtattttttgcagaacttcatgtttt 472  Q
    ||||||||||||||| ||  |||| || ||||||||||||||  |||||||||| ||||| ||  | |||||||||||||| ||||    
T  39651553 gagcttcttgaatcccacaacagggagcttcttctgctcctgagcttgcatgtactcctgataggtcttgcagaacttcatctttt 39651468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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