View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16950_low_6 (Length: 532)
Name: NF16950_low_6
Description: NF16950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16950_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 24 - 397
Target Start/End: Complemental strand, 13001332 - 13000959
Alignment:
| Q |
24 |
tcacaagaaaaccgatgaacgataacgatgacctcagaaacaccgtattgctgcatttcacacgaattcttccaaacagccaccgcaaacccaaacaaaa |
123 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13001332 |
tcacaagaaaacagatgaacgataactatgacctcagaaacaccgtattgctgcatttcacacgaattcttccaaacagccaccgcaaacccaaacaaaa |
13001233 |
T |
|
| Q |
124 |
tcgccgtaatccacgcttccggcgtcgccaacctttcccgccaaaattccacctccccaaacttcaaccaagacttcaccacgctcttacaacagcgcgt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13001232 |
tcgccgtaatccacgcttccggcgtcgccaacctttcccgccaaaattccacctccccaaacttcaaccaagacttcaccacgctcttacaacagcgcgt |
13001133 |
T |
|
| Q |
224 |
cgattccacctccccgccgttctaccacggtgaccgttctttcacttactctcaactcttagactccgttcgttctcttagttctcgtctaagctctatt |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
13001132 |
cgattccacctccccgccgttctaccacggtgaccgttctttcacttactctcaactcttagactccattcgttctcttagttctcgtctaagctctatt |
13001033 |
T |
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| Q |
324 |
cttcatggtgctcatcacccgcacctgattacagccaaatctcaaggttcgttataacggaaatttagttagag |
397 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13001032 |
cttcatggtgctcatgacccgcacctgattacagccaaatctcaaggttcgttataacggaaatttagttagag |
13000959 |
T |
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