View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16951_high_10 (Length: 238)
Name: NF16951_high_10
Description: NF16951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16951_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 20171291 - 20171494
Alignment:
| Q |
19 |
ataccatacctcatcatgcaagtactacaatagatgcacnnnnnnntcaaagttgcaatgtataaggaacccaaaacgaatcatatatgtttgtctgctt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
20171291 |
ataccatacctcatcatgcaagtactacaatacatgcacaaaaaaatcaaagttgcaatgtctaaggaacccaaaacgaatcatatatgtttgt--gctt |
20171388 |
T |
|
| Q |
119 |
taaggcaacaattacaaactctttgttgatttgaggttcacttacactgtaacaaggaaataatcacaagccatcttaatgtctatgttcgtttgaattg |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20171389 |
taaggcaacaattacaaactctttgttgatttgaggttcacttacactgtaacaaggaaataatcacaagccatcttaatgtctatgttcgtttgaattg |
20171488 |
T |
|
| Q |
219 |
agaata |
224 |
Q |
| |
|
|||||| |
|
|
| T |
20171489 |
agaata |
20171494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 44393001 - 44393204
Alignment:
| Q |
19 |
ataccatacctcatcatgcaagtactacaatagatgcacnnnnnnntcaaagttgcaatgtataaggaacccaaaacgaatcatatatgtttgtctgctt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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|
| T |
44393001 |
ataccatacctcatcatgcaagtactacaatacatgcacaaaaaaatcaaagttgcaatgtctaaggaacccaaaacgaatcatatatgtttgt--gctt |
44393098 |
T |
|
| Q |
119 |
taaggcaacaattacaaactctttgttgatttgaggttcacttacactgtaacaaggaaataatcacaagccatcttaatgtctatgttcgtttgaattg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44393099 |
taaggcaacaattacaaactctttgttgatttgaggttcacttacactgtaacaaggaaataatcacaagccatcttaatgtctatgttcgtttgaattg |
44393198 |
T |
|
| Q |
219 |
agaata |
224 |
Q |
| |
|
|||||| |
|
|
| T |
44393199 |
agaata |
44393204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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