View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16951_high_11 (Length: 206)
Name: NF16951_high_11
Description: NF16951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16951_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 2211792 - 2211618
Alignment:
| Q |
13 |
agcataggattatttggatatttctcaacagacaatctgtaaaagcactgatacaattagaactgaaacgattaatttcttatcaatacaggtccaaatt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2211792 |
agcataggattatttggatatttctcaacagacaatctgtaaaagcactgatacaattagaactgaaacgactaatttcttatcaatacaggtccaaatt |
2211693 |
T |
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| Q |
113 |
tttgctagtgttgttaaaaagcagaactatagtatagcagaatttgaagaaataggtattgttccatgataagct |
187 |
Q |
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| T |
2211692 |
tttgctagtgttgttaaaaagcaaaactatagtatagcagaatttgaagaaataggtattgttccatgataagct |
2211618 |
T |
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Target: chr5; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 2199129 - 2198955
Alignment:
| Q |
13 |
agcataggattatttggatatttctcaacagacaatctgtaaaagcactgatacaattagaactgaaacgattaatttcttatcaatacaggtccaaatt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||| |||||| ||||||||| |
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| T |
2199129 |
agcataggattatttggatatttctcaacagacaatctgtaaaagcactgatacaatcagaactgaaacggctaatgtcttattaatacatgtccaaatt |
2199030 |
T |
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| Q |
113 |
tttgctagtgttgttaaaaagcagaactatagtatagcagaatttgaagaaataggtattgttccatgataagct |
187 |
Q |
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|||||||||||||||||||||| |||| | |||||| ||||||| |||||||||| ||||||| ||| ||||||| |
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| T |
2199029 |
tttgctagtgttgttaaaaagcggaacaacagtataacagaattcgaagaaatagttattgtttcataataagct |
2198955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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