View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16951_high_2 (Length: 551)
Name: NF16951_high_2
Description: NF16951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16951_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 3 - 535
Target Start/End: Complemental strand, 54004268 - 54003736
Alignment:
| Q |
3 |
ttttttaagaggtgttaatttgtttatgatcacagtggtggagctgaaaagacctataaaagagaggcactggtttaatgagtatctcaaatctcaagga |
102 |
Q |
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| T |
54004268 |
ttttttatgaggtgttaatttgtttatgatcacagtggtggagctgaaaagacctataaaagagaggcactggtttaatgagtatctcaaatctcaagga |
54004169 |
T |
|
| Q |
103 |
tatatgtatgatcctgttattgagcttccactttcacctcaaggtagttatacttgtgatcaattttccattatctactttaattgttattttggatatg |
202 |
Q |
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| T |
54004168 |
tatatgtatgatcctgttattgagcttccactttcacctcaaggtagttatacttgttatcaattttccattatctactttaattgttattttggatatg |
54004069 |
T |
|
| Q |
203 |
gatagatatgcattcggcttttgttttgtaactttagctgctgaatttttgtgtcatgaataactgttaaagattagtagtttaatttaaataaattttt |
302 |
Q |
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| T |
54004068 |
gatagatatgcattcggcttttgttttgtaactttagctgctcaatttttgtgtcatgaataactgttaaagattagtagtttaatttaaataaattgtt |
54003969 |
T |
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| Q |
303 |
atgttagcattgaggatttagagacaattttaaaagaaatggtggaaaatatatctgtctcttgatttcattaattaacattatagtgattatgttttgt |
402 |
Q |
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| T |
54003968 |
atgttagcattgaggatttagagacaattttaaaagaaatggtggaaaatatatctgtctcttgatttcattaattaacattatagtgattatgttttgt |
54003869 |
T |
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| Q |
403 |
agctcattaaccctcttttctagcatattggtagctttatgttggagacttgagtataaataactataccaatagtccaatatgaacgggtaaattaaaa |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
54003868 |
agctcattaaccctcttttctagcatattggtagctttatgttggaaacttgagtataaacaactataccaatagtccaatatgaacgagtaaattaaaa |
54003769 |
T |
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| Q |
503 |
tagaagaatgaaaaagttgaatcattgagtaag |
535 |
Q |
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| T |
54003768 |
tagaagaatgaaaaagttgaatcattgagtaag |
54003736 |
T |
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