View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16951_high_4 (Length: 447)
Name: NF16951_high_4
Description: NF16951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16951_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 196 - 431
Target Start/End: Complemental strand, 1760017 - 1759772
Alignment:
| Q |
196 |
aaaaagacagaatgggcataacttttcaaagtcagaatggaattaaattctccaaagtaggaagtttctgcatttccttca----------agttgagag |
285 |
Q |
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| T |
1760017 |
aaaaagacagaatgggcataacttttcaaagtcagaatggaattaaattctccaaagtaggaagtttctgcatttccttcatttaggcaaaagttgagag |
1759918 |
T |
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| Q |
286 |
aacttttgtctttgcaacatgtcaaaaagtcacatacacaccattttctctttattgataaagtttttcttaaatgcaggaaaatttaagaaactcaaat |
385 |
Q |
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| T |
1759917 |
aacttttgtcttcgcaacatgtcaaaaagtcacatacacaccattttctctttattgataaagtttttcttaaatgcaggaaaatttaagaaactcaaat |
1759818 |
T |
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| Q |
386 |
atagaaatttcaaatcaagccatgacccctatatatagcatccttg |
431 |
Q |
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| T |
1759817 |
atagaaatttcaaatcaagccatgacccctatatatagcatccttg |
1759772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 1760208 - 1760083
Alignment:
| Q |
1 |
gaaaaaattatttcatctacggatcgaactcgagtgatttgaacaatttaattgtaactcaaatctttattaagtatttcatccaaccacttggttaatt |
100 |
Q |
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| T |
1760208 |
gaaaaaattatttcatctacggatcgaactcgagtgacttgaacaatttaattgtaactcaaagctttattaagtatttcatccaaccacttggttaatt |
1760109 |
T |
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| Q |
101 |
acctaaatattttgtgctttgtatac |
126 |
Q |
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| T |
1760108 |
acctaaatattttgtgctttgtatac |
1760083 |
T |
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