View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16951_low_11 (Length: 304)
Name: NF16951_low_11
Description: NF16951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16951_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 40385062 - 40384930
Alignment:
| Q |
19 |
ggcatctctatcccatattttacgatttttaatgaagtaaataaacaacacacatgggatcagagtgagacattttagaaagaaagacatcacacgtgca |
118 |
Q |
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| T |
40385062 |
ggcatctctatcccatattttacgatttttaatgaactaaataaacaacacacatgggatcagagtgagacattttagaaagaaagacatcacacgtgca |
40384963 |
T |
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| Q |
119 |
caagtatcccttcaattcatcaaacttctcaac |
151 |
Q |
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| T |
40384962 |
caagtatcccttcaattcatcaaacttctcaac |
40384930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 40384862 - 40384788
Alignment:
| Q |
219 |
attctccattgtagtttcgatatcaacaacattttgaagagggatcactactacttgcagctgattctcattcat |
293 |
Q |
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| T |
40384862 |
attctccattgtagtttcgatatcaacaacattttgaagagggatcactactacttgcagctgattctcattcat |
40384788 |
T |
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