View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16951_low_3 (Length: 485)
Name: NF16951_low_3
Description: NF16951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16951_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 24358496 - 24358857
Alignment:
| Q |
1 |
gacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaagaaggctaaacaaagat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
24358496 |
gacagtgatgatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattttggacgaatggcttaattggaagaaggctaaacaaagat |
24358595 |
T |
|
| Q |
101 |
caccttttgtttctcctcgaccacataagaaagttcgaggtt-ggtttggtttcttgattttcttttcagtgtgcatatatataatacataatggattga |
199 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
24358596 |
cacctttcgtttctcctcgaccacataaaaaagttcgaggtttggtttggtttcttgattttcttttcagtgtacatat--ataatacataatggattga |
24358693 |
T |
|
| Q |
200 |
tgctcttcaagagtttcttcgatgttttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaataaattggccaaagg |
299 |
Q |
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|||||||||||||||||||| || |||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24358694 |
tgctcttcaagagtttcttctttgatttacattgcacgcatatatgcaggtgatgatgagaagactactaaaagaacttcatcaataaattggccaaagg |
24358793 |
T |
|
| Q |
300 |
atgttagagctcaggaagttgctcaaaatttcatctcatgcaatccttttttcacaattctcat |
363 |
Q |
| |
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|||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24358794 |
atgttagagctcagaaagtagctcaaaatttcatctcaaacaatccttttttcacaattctcat |
24358857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 205 - 471
Target Start/End: Original strand, 24370017 - 24370283
Alignment:
| Q |
205 |
ttcaagagtttcttcgatgttttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaataaattggccaaaggatgtt |
304 |
Q |
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| T |
24370017 |
ttcaagagtttcttcgatgttttacatttcacacatatatgcaggtgatgatgagaagactactaaaagaacttcatcaatgaattggccaaaggatgtt |
24370116 |
T |
|
| Q |
305 |
agagctcaggaagttgctcaaaatttcatctcatgcaatccttttttcacaattctcatcaagccaattaatctggtagaacatactcgggtaggatgca |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24370117 |
agagctcaggaagttgctcaaaatttcatctcatgcaatccatttttcacaattctcatcaagccaattaatctggtagaacatactcgggtaggatgca |
24370216 |
T |
|
| Q |
405 |
caaacacaatttttactacatatattcatttatgctgcgattataaattatgatgattgataatagt |
471 |
Q |
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| T |
24370217 |
caaacacaatttttactacatatattcatttatgctgtgattataaattatgatgattgataatagt |
24370283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 24369852 - 24370020
Alignment:
| Q |
1 |
gacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaagaaggctaaacaaagat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24369852 |
gacagtgatgatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattttggatgaatggcttaatcggaagaaggctagacaaagat |
24369951 |
T |
|
| Q |
101 |
caccttttgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattttcttttca |
168 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
24369952 |
caccttttgtttcttctcgaccacataagaaagttcaaggtttggtttggtttcttgattttcttttca |
24370020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 8 - 170
Target Start/End: Complemental strand, 24364788 - 24364625
Alignment:
| Q |
8 |
atgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaagaaggctaaacaaagatcaccttt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24364788 |
atgatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattttggatgaatggcttaatcggaagaaggctagacaaagatcaccttt |
24364689 |
T |
|
| Q |
108 |
tgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattttcttttcagt |
170 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
24364688 |
tatttctactcgaccacataagaaagttcgaggtttggtttggtttcttgattttcttttcagt |
24364625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 226 - 363
Target Start/End: Complemental strand, 24364541 - 24364404
Alignment:
| Q |
226 |
ttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaataaattggccaaaggatgttagagctcaggaagttgctcaa |
325 |
Q |
| |
|
||||||| |||||||||||||||| ||| ||||||||||| |||||||||||||||||||||| ||||| ||| ||| ||||||||||||||| |||||| |
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| T |
24364541 |
ttacattgcacacatatatgcaggagatcatgagaagactactaaaagaacttcatcaataaactggccgaagaatgctagagctcaggaagtagctcaa |
24364442 |
T |
|
| Q |
326 |
aatttcatctcatgcaatccttttttcacaattctcat |
363 |
Q |
| |
|
||||||||||||||||||||||| || ||| ||||||| |
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|
| T |
24364441 |
aatttcatctcatgcaatcctttctttacagttctcat |
24364404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 222 - 369
Target Start/End: Original strand, 24355617 - 24355759
Alignment:
| Q |
222 |
tgttttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaataaattggccaa-aggatgttagagctcaggaagttg |
320 |
Q |
| |
|
||||||| ||| ||||||||||||||||||| | |||| ||| ||||||||||||||||| |||||||| |||| | ||||||||||||||| | |
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| T |
24355617 |
tgttttatattccacacatatatgcaggtgagattaagaaaactgctaaaagaacttcatca-----ttggccaagagga-gctagagctcaggaagtag |
24355710 |
T |
|
| Q |
321 |
ctcaaaatttcatctcatgcaatccttttttcacaattctcatcaagcc |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24355711 |
ctcaaaatttcatctcatgcaatccttttttcacaattctcatcaagcc |
24355759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 24354862 - 24354974
Alignment:
| Q |
26 |
ttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaagaaggctaaacaaagatcaccttttgtttctcctcgaccaca |
125 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||| ||||||||||||| |||||| |||| ||||||||||||||| |||||||||||||| || |
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|
| T |
24354862 |
ttgatcatagtgatgatgag---tctgttgagattttggaagaatggcttaatcagaagaatgctagacaaagatcacctttcgtttctcctcgacctca |
24354958 |
T |
|
| Q |
126 |
taagaaagttcgaggt |
141 |
Q |
| |
|
|||||||||| ||||| |
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|
| T |
24354959 |
taagaaagttagaggt |
24354974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 222 - 385
Target Start/End: Original strand, 24362479 - 24362642
Alignment:
| Q |
222 |
tgttttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaataaattggccaaaggatgttagagctcaggaagttgc |
321 |
Q |
| |
|
||||||| ||||||||||||||||||||||| | |||||||| || |||||||| ||||| | |||||||| | || | |||||||| ||||| || |
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|
| T |
24362479 |
tgttttatatttcacacatatatgcaggtgagattaagaagactactgaaagaactacatcattgaattggcctatgggagctagagctcgagaagtagc |
24362578 |
T |
|
| Q |
322 |
tcaaaatttcatctcatgcaatccttttttcacaattctcatcaagccaattaatctggtagaa |
385 |
Q |
| |
|
| ||| ||||||||| ||||||||||||||||||||||||| ||||| | | ||||||||||| |
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|
| T |
24362579 |
tgcaaaattcatctcaagcaatccttttttcacaattctcataaagcctaatcatctggtagaa |
24362642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 24344565 - 24344634
Alignment:
| Q |
1 |
gacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggc |
73 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||| |
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|
| T |
24344565 |
gacactgatgatgaaaatgacaatgttggtcatagtgatgatg---aatcagttgagattttagatgaatggc |
24344634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 363
Target Start/End: Original strand, 24346558 - 24346651
Alignment:
| Q |
270 |
aaagaacttcatcaataaattggccaaaggatgttagagctcaggaagttgctcaaaatttcatctcatgcaatccttttttcacaattctcat |
363 |
Q |
| |
|
|||||||| ||||| ||||||||||||| | ||||||||||||||| ||| ||| ||||||||| |||||||||||||||||||||||| |
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|
| T |
24346558 |
aaagaactacatcatggaattggccaaagggagctagagctcaggaagtagctttaaaattcatctcaaccaatccttttttcacaattctcat |
24346651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 471
Target Start/End: Complemental strand, 24364295 - 24364258
Alignment:
| Q |
434 |
ttatgctgcgattataaattatgatgattgataatagt |
471 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
24364295 |
ttatgctgtgattataagttatgatgattgataatagt |
24364258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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