View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16951_low_5 (Length: 406)
Name: NF16951_low_5
Description: NF16951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16951_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 13 - 395
Target Start/End: Original strand, 22378909 - 22379291
Alignment:
| Q |
13 |
caaaggggtagtctctggtaattttccattcacaagatcagaaaccttacttgttgtgcaagcaatacaaaccacattaccataaaacccttctttcaat |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22378909 |
caaaagggtagtctctggtaattttccattcacaagatcagaaaccttacttgttgtgcaagcaatacaaaccacattaccataaaacccttctttcaat |
22379008 |
T |
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| Q |
113 |
ggtggatttttaagcttctgtctagcattaactgaaaatgttaaccttaattcgtaatcttgcggcttaacatcaagagctttaacccatgatctccaaa |
212 |
Q |
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| T |
22379009 |
ggtggatttttaagcttctgtctagcattaactgaaaatgttaaccttaattcgtaatcttgcggcttaacatcaagagctttaacccatgatctccaaa |
22379108 |
T |
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| Q |
213 |
tatgtgcagccattgcatcaaatgtagtgcaaccagcagaatcaaatggttgagcaagtgatttcaactggttttgaaactcgcgtcttatgcgataaca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22379109 |
tatgtgcagccattgcatcaaatgtagtgcaaccagcagaatcaaatggttgagcaagtgatttcaactggttttgaaactcgcgtcttatgcgataaca |
22379208 |
T |
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| Q |
313 |
cttctgaacgggctttgttttccaaagtttcattgttaagtttgatccttcatcaattctcatgaactccatatgtggaaatt |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22379209 |
cttctgaacgggctttgttttccaaagtttcattgttaagtttgatccttcatcaattctcatgaactccatatgtggaaatt |
22379291 |
T |
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