View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16951_low_9 (Length: 330)
Name: NF16951_low_9
Description: NF16951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16951_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 40026983 - 40026678
Alignment:
| Q |
16 |
ctgatcggaaagttttattggttgactggttgctacttgtttctaaagttaagcaagcattgaaacaaggcattgagagcgaaaaaagaaagagactaag |
115 |
Q |
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| T |
40026983 |
ctgatcggaaagtttgattggttgactggttgctacttgtttctaaagttaagcaagcattgaaacaatgcattgagagcgaaaaaagaaagagactaag |
40026884 |
T |
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| Q |
116 |
taatatattaaccatttttcgttgtgtgga---tgattagaaacaaggcaaagggaccgatgatatatatactggtctaaaaatcaggaatattttttta |
212 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40026883 |
taatatattaaccatttttcgttgtgtggatgatgattagaaacaaggcaaagggaccgatgatatatatactggtctaaaaatcaggaatattttttta |
40026784 |
T |
|
| Q |
213 |
ttttctgaggtggaatgnnnnnnnngttatgtttcgtggaaatacgatctcgaaggaacta---nnnnnnnnngaagaagatctcgattataaatgataa |
309 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40026783 |
ttttctgaggtggaatgttttttttgttatgtttcgtggaaatacgatctcgaaggaactattttttttttttgaagaagatctcgattataaatgataa |
40026684 |
T |
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| Q |
310 |
atgaag |
315 |
Q |
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|||||| |
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| T |
40026683 |
atgaag |
40026678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 49 - 134
Target Start/End: Original strand, 30910751 - 30910836
Alignment:
| Q |
49 |
tacttgtttctaaagttaagcaagcattgaaacaaggcattgagagcgaaaaaagaaagagactaagtaatatattaaccattttt |
134 |
Q |
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||||||||||| ||| |||||||||| ||||||| |||||||||| || |||||||| |||| | |||||| ||||||||||||| |
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| T |
30910751 |
tacttgtttctgaagctaagcaagcaacgaaacaatgcattgagagagagaaaagaaatagaccatgtaatagattaaccattttt |
30910836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 30920137 - 30920267
Alignment:
| Q |
16 |
ctgatcggaaagttttattggttgactggttgctacttgtttctaaagttaagcaa---gcattgaaacaaggcattgagagcgaaaaaagaaagagact |
112 |
Q |
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||||||||||||||| ||||| | || | | | | ||||||||| ||| ||||||| ||| ||||||| |||||||||| ||| ||||||||||| |
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| T |
30920137 |
ctgatcggaaagtttgattggctaacggatggttgcttgtttctgaagctaagcaataagcaacgaaacaatgcattgagagacaaagaagaaagagacc |
30920236 |
T |
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| Q |
113 |
aagtaatatattaaccatttttcgttgtgtg |
143 |
Q |
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| T |
30920237 |
atataatagattaaccatttttgcttgtgtg |
30920267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 22880441 - 22880395
Alignment:
| Q |
65 |
taagcaagcattgaaacaaggcattgagagcgaaaaaagaaagagac |
111 |
Q |
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|||||||||| ||||||| ||||||||||| ||||||||||||||| |
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| T |
22880441 |
taagcaagcaacgaaacaatgcattgagagcaaaaaaagaaagagac |
22880395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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