View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16952_high_11 (Length: 236)
Name: NF16952_high_11
Description: NF16952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16952_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 44783854 - 44784043
Alignment:
| Q |
1 |
atcttcattacacaaatctaatatatgaaaccaggaaaagaatatcatatttctcaaattatgtagagaaaatacattgattatttaaaattgatgtaat |
100 |
Q |
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| T |
44783854 |
atcttcattacacaaatctaatatatgaaaccaggaaaagaatatcatatttctcaaattatgtagagaaaatacattgattatttaaaattgatgtaat |
44783953 |
T |
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| Q |
101 |
gagaaaagccgattacaaatttataatgagacgttgatctagacagtagac--atgcatggaaggattttaaccaacatagagaatagta |
188 |
Q |
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| T |
44783954 |
gagaaaagtcgattacaaatttataatgagacgttgatctagacagtagacatatgcatggaaggattttaaccaacatagagaatagta |
44784043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 44784051 - 44784092
Alignment:
| Q |
180 |
agaatagtagatgagatgttaggtaccaacatgaacataggc |
221 |
Q |
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| T |
44784051 |
agaatagtagatgagatgttaggtaccaacatgaacataggc |
44784092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 44800133 - 44800194
Alignment:
| Q |
1 |
atcttcattacacaaatctaatatatgaaaccaggaaaagaatatcatatttctcaaattat |
62 |
Q |
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| T |
44800133 |
atcttcatcacacaaatttaataaaaaaaaccaggaaaagaatatcatattcctctaattat |
44800194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 44788505 - 44788560
Alignment:
| Q |
10 |
acacaaatctaatatatgaaaccaggaaaagaatatcatatttctcaaattatgta |
65 |
Q |
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| T |
44788505 |
acacagatccaatataggaaaccaggaaaagaatctcctattcctcaaattatgta |
44788560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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