View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16952_high_14 (Length: 205)
Name: NF16952_high_14
Description: NF16952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16952_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 40264430 - 40264254
Alignment:
| Q |
14 |
agagaaatcaaggatcatcttgagaagtgtttgaaatattggtatcaactatgattttcaaaacacaacaccacttcatatttctcacaccggtgtaagc |
113 |
Q |
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| T |
40264430 |
agagaaatcaaggatcatcttgagaagtgtttgaaatattggtatcaactatgattttcaaaacacaacaccacttcatatttctcacaccggtgtaagc |
40264331 |
T |
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| Q |
114 |
tcgtttctttacttaccccaattttcttgtgcctcactctttctccctctaccctaccattcctcattcatcttttt |
190 |
Q |
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| T |
40264330 |
tcgtttctttacttaccccaattttcttgtgcctcactccttctccctctaccctaccattcctcattcatcttttt |
40264254 |
T |
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