View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16952_high_3 (Length: 489)
Name: NF16952_high_3
Description: NF16952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16952_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 11 - 471
Target Start/End: Original strand, 10366976 - 10367436
Alignment:
| Q |
11 |
cacagaccctaagtaatttagtttaattttccatttttatttctagttttcttgcttgtacaccacttttgaataggtactataaataatannnnnnnga |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10366976 |
cacagaccctaagtaatttagtttaattttccatttttatttctagttttcttgcttgtacaccacttttgaataggtactataaataatatttttttga |
10367075 |
T |
|
| Q |
111 |
gaaatgaaagtatataattatgatttctgttgactgatattgatagtttgagtttcaatgtgtcaaaatgtagtgtcatgattcaggaatgccactagag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10367076 |
gaaatgaaagtatataattatgatttctgttgactgatattgatagtttgagtttcaatgtgtcaaaatgtagtgtcaggattcaggaatgccactagag |
10367175 |
T |
|
| Q |
211 |
atgggaaagaataaacaacctacagaatcaagtgttcgtgaccccgaaaaaagagaagaaacctctcttgaatgtttttccccgtttggctttgggatga |
310 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||| || |||||||||||||||||||||| ||| ||| |
|
|
| T |
10367176 |
atgggaaagaataaacaacctacggaatcaagtgttcgtgaccctgaaaaaagagaagaaacttctgttaaatgtttttccccgtttggcttcggggtga |
10367275 |
T |
|
| Q |
311 |
aggagtggttttggaagaggcaacacaacccaaagaaatgtattgaaaaagtgcatgaaatctacactaaggaatgcgttgaagtagagtctggactctt |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10367276 |
aggagtggttttggaagaggcaacacaacccaaagaaatgtattgaaaaagtgcatgaaatctacacaaaggaatgcgttgaagtagagtctggactctt |
10367375 |
T |
|
| Q |
411 |
tcttcttcctgatgacattcttgaattgtgtttggatcgtcttccattcgaaggtctcaag |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10367376 |
tcttcttcctgatgacattcttgaattgtgtttggatcgtcttccattcgaaggtctcaag |
10367436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 372 - 471
Target Start/End: Original strand, 10378862 - 10378961
Alignment:
| Q |
372 |
ctacactaaggaatgcgttgaagtagagtctggactctttcttcttcctgatgacattcttgaattgtgtttggatcgtcttccattcgaaggtctcaag |
471 |
Q |
| |
|
||||||||||||||| ||||||||| |||| | | |||||||||||||||||||||||||||||||||||||| || |||||||||| ||| |||||||| |
|
|
| T |
10378862 |
ctacactaaggaatgtgttgaagtacagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctcaag |
10378961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 468
Target Start/End: Original strand, 43657570 - 43657649
Alignment:
| Q |
389 |
ttgaagtagagtctggactctttcttcttcctgatgacattcttgaattgtgtttggatcgtcttccattcgaaggtctc |
468 |
Q |
| |
|
|||||||| |||| | | ||||||||||||| |||| ||||||||| |||||||||||||| || ||| |||| ||||| |
|
|
| T |
43657570 |
ttgaagtaaagtccgaaatctttcttcttcccgatggtattcttgaaatgtgtttggatcgtgttgcatgcgaaagtctc |
43657649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University