View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16952_high_7 (Length: 323)
Name: NF16952_high_7
Description: NF16952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16952_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 166; Significance: 8e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 14 - 306
Target Start/End: Original strand, 35738791 - 35739061
Alignment:
| Q |
14 |
aaatcgtttgaagggaatctgaataacaaatgatgtctttgaaccctgcgtcttaaccaattttgattttatttttacttgtgtannnnnnnnnnaatgt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35738791 |
aaatcgtttgaagggaatctgaataacaaatgatgtctttgaaccctgcgtcttaaccaattttgattttatttttacttgtgta--ttttttttaatgt |
35738888 |
T |
|
| Q |
114 |
ttacaaaatgatggatattaggttgtttgagtttgattgggaaaatcaagtagcatatgaaaacaac--caacttcacttgaatgacatacataatctca |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| |
|
|
| T |
35738889 |
ttacaaaatgatggatattaggttgtttgagtttgattgggaaaatcaactagcatatgaaaacaacttcaacttcacttcaat---------------- |
35738972 |
T |
|
| Q |
212 |
taccatgccgaaatcatgaagatagaaaataaagaagtgaagatgaggttgaaaatgaagtgttgtcaatggcatcagcattgcctattagtaag |
306 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35738973 |
------gccgaaatcatgaagatataaaataaagaagtgaagatgaggttgaaaatgaagtgttgtcaatggcatcagcattgcctattagtaag |
35739061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 43097193 - 43097152
Alignment:
| Q |
19 |
gtttgaagggaatctgaataacaaatgatgtctttgaaccct |
60 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
43097193 |
gtttgaagggaatatgaataacaaataatgtctttgaaccct |
43097152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University