View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16952_high_8 (Length: 317)
Name: NF16952_high_8
Description: NF16952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16952_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 40264893 - 40264612
Alignment:
| Q |
1 |
ttatgtttcccgcaaaacgattgatgaacagattgcagatcttacatatttcgcgaggttgctttactgcctagtttcttattctgtgttttgttctata |
100 |
Q |
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| T |
40264893 |
ttatgtttcccgcaaaacgattgatgaacagattgcagatcttacatatttcgcgaggttgctttactgcctagtttcttattctgtgttttgttctata |
40264794 |
T |
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| Q |
101 |
agannnnnnncattgactgaactttcttattaggaggtttaagtatgcttctgtggaactcacggtgtttggtgcttggctaatagccgaatttgctatt |
200 |
Q |
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| T |
40264793 |
agattttttt-attgactgaactttcttattaggaggtttaagtatgcttctgtgggactcacgctgtttggtgcttggctaatagccgaatttgctatt |
40264695 |
T |
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| Q |
201 |
tggtgcatcacgaaagacggtgatgctgtgagctgtgaaaaaggtacaatccactaggttattcatttatatgattttcaatt |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40264694 |
tggtgcatcacgaaagacggtgatgctgtgagctgtgaaaaaggtacaatccactaggttattcatttatatgattttcaatt |
40264612 |
T |
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