View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16952_high_9 (Length: 247)
Name: NF16952_high_9
Description: NF16952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16952_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 33811248 - 33811009
Alignment:
| Q |
1 |
gttcacctttggaagctaattggataatgtttttgtttgttaaggattttcctaatgagtaattctcatcgagaatttgcttgtttaaggaaagtgaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811248 |
gttcacctttggaagctaattggataatgtttttgtttgttaaggattttcctaatgagtaattctcatcgagaatttgcttgtttaaggaaagtgaaag |
33811149 |
T |
|
| Q |
101 |
ctgggtagattttttctttgaggtgagatggtagtatttttcagttgttttccaccatgctgaaactgaaggttggtttggttttgatgaagatggtgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811148 |
ctgggtagattttttctttgaggtgagatggtagtatttttcagttgttttccaccatgctgaaactgaaggttggtttggttttgatgaagatggtgaa |
33811049 |
T |
|
| Q |
201 |
gaaagtgaggtgaaaaaatcagtgattatagctttctgtg |
240 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33811048 |
gaaagtgaggtgaaaaaatcagtaattatagctttctgtg |
33811009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 27002467 - 27002433
Alignment:
| Q |
45 |
gattttcctaatgagtaattctcatcgagaatttg |
79 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27002467 |
gattttcctaatgagtaattctcattgagaatttg |
27002433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University