View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16952_low_1 (Length: 650)
Name: NF16952_low_1
Description: NF16952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16952_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-147; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 364 - 632
Target Start/End: Complemental strand, 33659690 - 33659422
Alignment:
| Q |
364 |
ctgctttcaatattttgaacagaaaatagtttgatatattttggacacaagtgaaaacagtggtatttttgtaattaaaagtgaaaacagtaaatgaaaa |
463 |
Q |
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| T |
33659690 |
ctgctttcaatattttgaacagaaaatagtttgatatattttggacacaagtgaaaacattggtatttttgtaattaaaagtgaaaacagtaaatgaaaa |
33659591 |
T |
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| Q |
464 |
taaatgttttttgaaaccaaatagactctcaacggttggctcatgggcctttggtttgaaagaggtaccccacaaaatctaaaaagctaggttagcaaga |
563 |
Q |
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| T |
33659590 |
taaatgttttttgaaaccaaatagactctcaacggttggctcatgggcctttggtttgaaagaggtaccccacaaaatctaaaaagctaggttagcaaga |
33659491 |
T |
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| Q |
564 |
gcgagatactgaggtagggaatgtggggaggtgagaccatgtaactggaggaattttgtacggggtagt |
632 |
Q |
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| T |
33659490 |
gcgagatactgaggtagggaatgtggggaggtgagaccatgtaactggaggaattttgtacggggtagt |
33659422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 14 - 286
Target Start/End: Complemental strand, 33660041 - 33659769
Alignment:
| Q |
14 |
gcataggagatattttaagcttgacatttatgtggaaaaattgcgttttcatgccttgggagaacactagcacattatttggaatgaaagttgaagcaca |
113 |
Q |
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| T |
33660041 |
gcataggagatattttaagcttgacatttatgtggaaaaattgcgttttcatgccgtgggagaacactagcacattatttggaatgaaagttgaagcaca |
33659942 |
T |
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| Q |
114 |
aaactttgttttgagaatgatgttcgtatacatgtgcatgatataattatttgactttaacatgggaaagcatagaaattggaaaatcattgaacaatat |
213 |
Q |
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| T |
33659941 |
aaactttgttttgagaatgatgttcgtatacatgtgcatgatataattatttgactttaacatgggaaagcatagaaattggaaaatcattgaacaatat |
33659842 |
T |
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| Q |
214 |
atattaaattatggatgaaggatgctaggcactagtctgttggggggaagggaaaaggctaacgatctgtctg |
286 |
Q |
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| T |
33659841 |
atattaaattatggatgaaggatgctaggcactagtctgttagggggaagggaaaaggctaacgatctgtctg |
33659769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 431 - 463
Target Start/End: Original strand, 5070150 - 5070182
Alignment:
| Q |
431 |
tttgtaattaaaagtgaaaacagtaaatgaaaa |
463 |
Q |
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| T |
5070150 |
tttgtaattaaaagtgaaaacaggaaatgaaaa |
5070182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 465
Target Start/End: Complemental strand, 41373354 - 41373315
Alignment:
| Q |
426 |
gtatttttgtaattaaaagtgaaaacagtaaatgaaaata |
465 |
Q |
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| T |
41373354 |
gtatttttgtaattaaaagtaaaaacaggaaatgaaaata |
41373315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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