View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16952_low_11 (Length: 244)
Name: NF16952_low_11
Description: NF16952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16952_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 33811422 - 33811650
Alignment:
| Q |
1 |
tgtgcttggccatttcaccaaccaatttacggtccacaaagcgcaccattggttgcaccaaacaacgatgtagggcttgatggaatggtgataaacttgg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33811422 |
tgtgcttggccatttcaccaaccaatttacggtccacaaagcgcaccattggttgcaccaaacaacgatgtagggcttgatggaatggtgataaacttgg |
33811521 |
T |
|
| Q |
101 |
ctagtcttttagctggaacagcaacaaacccttttggaaatggttactttcaaggtccttctgaagctcctcttgaagctgcttcagcttgtcctggtgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33811522 |
ctagtcttttagctggaacagcaacaaacccttttggaaatggttactttcaaggtccttctgaagctcctcttgaagccgcttcagcttgtcctggtgt |
33811621 |
T |
|
| Q |
201 |
ttatggtaaaggtgcttaccctggttatg |
229 |
Q |
| |
|
|||||| |||||||||||||||||||||| |
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|
| T |
33811622 |
ttatggcaaaggtgcttaccctggttatg |
33811650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 33828658 - 33828881
Alignment:
| Q |
1 |
tgtgcttggccatttcaccaaccaatttacggtccacaaagcgcaccattggttgcaccaaacaacgatgtagggcttgatggaatggtgataaacttgg |
100 |
Q |
| |
|
||||| ||||| ||||||||||| ||||| || || ||||| |||| || ||||||||||| |||||||| || ||||| || ||||| || ||| ||| |
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| T |
33828658 |
tgtgcgtggccctttcaccaacctatttatgggcctcaaagtccaccgttagttgcaccaaataacgatgtgggccttgacggcatggtaattaacgtgg |
33828757 |
T |
|
| Q |
101 |
ctagtcttttagctggaacagcaacaaacccttttggaaatggttactttcaaggtccttctgaagctcctcttgaagctgcttcagcttgtcctggtgt |
200 |
Q |
| |
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||||| | || ||||| | || ||||| |||||||| || |||| |||||| || ||||| ||||||||||||||||| ||||| |||| || |
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| T |
33828758 |
ctagtttgttggctggggccttgacgaacccatttggaaacgggtactatcaaggccccaaagaagcacctcttgaagctgcttcggcttgcactggagt |
33828857 |
T |
|
| Q |
201 |
ttatggtaaaggtgcttaccctgg |
224 |
Q |
| |
|
||||||||||| ||||||||||| |
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|
| T |
33828858 |
gtatggtaaaggagcttaccctgg |
33828881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 33821436 - 33821653
Alignment:
| Q |
7 |
tggccatttcaccaaccaatttacggtccacaaagcgcaccattggttgcaccaaacaacgatgtagggcttgatggaatggtgataaacttggctagtc |
106 |
Q |
| |
|
||||| ||||||||||| ||||| || || |||||| |||| || |||||||| || |||||||| || ||||| || |||||||| ||| |||||||| |
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| T |
33821436 |
tggccctttcaccaacctatttatgggcctcaaagcccaccgttagttgcacccaataacgatgtgggccttgacggcatggtgattaacgtggctagtt |
33821535 |
T |
|
| Q |
107 |
ttttagctggaacagcaacaaacccttttggaaatggttactttcaaggtccttctgaagctcctcttgaagctgcttcagcttgtcctggtgtttatgg |
206 |
Q |
| |
|
| || ||||| | || ||||| ||||||||||| |||| |||||| || ||||| ||||||||||| ||||| |||||| |||| | | || |
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| T |
33821536 |
tattggctggggtcgtgacgaacccatttggaaatgggtactatcaaggccccaaagaagcacctcttgaagccgcttcggcttgtactggagagttcgg |
33821635 |
T |
|
| Q |
207 |
taaaggtgcttaccctgg |
224 |
Q |
| |
|
|||||| ||||||||||| |
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|
| T |
33821636 |
taaaggggcttaccctgg |
33821653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 26721969 - 26722191
Alignment:
| Q |
7 |
tggccatttcaccaaccaatttacggtccacaaagcgcaccattggttgcaccaaacaacgatgtagggcttgatggaatggtgataaacttggctagtc |
106 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |||||||| || ||||| |||||||| ||||| | ||||||| |
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|
| T |
26721969 |
tggccatttcaccaaccaatttatggtccacaaagtgcaccgttggttgcaccaaataacgatgtgggtcttgacggaatggttataaatgttgctagtc |
26722068 |
T |
|
| Q |
107 |
ttttagctggaacagcaacaaacccttttggaaatggttactttcaaggtccttctgaagctcctcttgaagctgcttcagcttgtcctggtgtttatgg |
206 |
Q |
| |
|
||||||||||||| | |||||| |||||||| |||||||| |||||||| ||| ||||||||| | ||||||||||| ||||| | |||||||||| |
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|
| T |
26722069 |
ttttagctggaaccgtaacaaatccttttggtaatggttattttcaaggacctaaagaagctcctttggaagctgcttcggcttgcaccggtgtttatgc |
26722168 |
T |
|
| Q |
207 |
taaaggtgcttaccctggttatg |
229 |
Q |
| |
|
|||||| ||||| |||||||||| |
|
|
| T |
26722169 |
taaaggagcttatcctggttatg |
26722191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 26991718 - 26991940
Alignment:
| Q |
7 |
tggccatttcaccaaccaatttacggtccacaaagcgcaccattggttgcaccaaacaacgatgtagggcttgatggaatggtgataaacttggctagtc |
106 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |||||||| || ||||| |||||||| ||||| | ||||||| |
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|
| T |
26991718 |
tggccatttcaccaaccaatttatggtccacaaagtgcaccgttggttgcaccaaataacgatgtgggtcttgacggaatggttataaatgttgctagtc |
26991817 |
T |
|
| Q |
107 |
ttttagctggaacagcaacaaacccttttggaaatggttactttcaaggtccttctgaagctcctcttgaagctgcttcagcttgtcctggtgtttatgg |
206 |
Q |
| |
|
||||||||||||| | |||||| |||||||| |||||||| |||||||| ||| ||||||||| | ||||||||||| ||||| | |||||||||| |
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|
| T |
26991818 |
ttttagctggaaccgtaacaaatccttttggtaatggttattttcaaggacctaaagaagctcctttggaagctgcttcggcttgcaccggtgtttatgc |
26991917 |
T |
|
| Q |
207 |
taaaggtgcttaccctggttatg |
229 |
Q |
| |
|
|||||| ||||| |||||||||| |
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|
| T |
26991918 |
taaaggagcttatcctggttatg |
26991940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 27002688 - 27002910
Alignment:
| Q |
7 |
tggccatttcaccaaccaatttacggtccacaaagcgcaccattggttgcaccaaacaacgatgtagggcttgatggaatggtgataaacttggctagtc |
106 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |||||||| || |||||||||||||| ||||| | ||||||| |
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|
| T |
27002688 |
tggccatttcaccaaccaatttatggtccacaaagtgcaccgttggttgcaccaaataacgatgtcggtcttgatggaatggttataaatgttgctagtc |
27002787 |
T |
|
| Q |
107 |
ttttagctggaacagcaacaaacccttttggaaatggttactttcaaggtccttctgaagctcctcttgaagctgcttcagcttgtcctggtgtttatgg |
206 |
Q |
| |
|
||||||||||||| | ||| || |||||||| ||||||||||||||||| || ||||||||| | ||||||||||| ||||| | |||||||||| |
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|
| T |
27002788 |
ttttagctggaaccgtaaccaatccttttggtaatggttactttcaaggaccaaaagaagctcctttggaagctgcttcggcttgcaccggtgtttatgc |
27002887 |
T |
|
| Q |
207 |
taaaggtgcttaccctggttatg |
229 |
Q |
| |
|
|||||| ||||| |||||||||| |
|
|
| T |
27002888 |
taaaggagcttatcctggttatg |
27002910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 26996413 - 26996635
Alignment:
| Q |
7 |
tggccatttcaccaaccaatttacggtccacaaagcgcaccattggttgcaccaaacaacgatgtagggcttgatggaatggtgataaacttggctagtc |
106 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| || || |||||||||||||| |||||||| || ||||| |||||||| ||||| | ||||||| |
|
|
| T |
26996413 |
tggccatttcatcaaccaatttatggtccacaaagtgctccgttggttgcaccaaataacgatgtgggtcttgacggaatggttataaatgttgctagtc |
26996512 |
T |
|
| Q |
107 |
ttttagctggaacagcaacaaacccttttggaaatggttactttcaaggtccttctgaagctcctcttgaagctgcttcagcttgtcctggtgtttatgg |
206 |
Q |
| |
|
||||||||||||| | ||| || |||||||| || ||||| |||||||| || ||||||||| | ||||||||||| ||||| | |||||||||| |
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|
| T |
26996513 |
ttttagctggaaccgtaaccaatccttttggtaacggttattttcaaggaccaaaagaagctcctttggaagctgcttcggcttgcaccggtgtttatgc |
26996612 |
T |
|
| Q |
207 |
taaaggtgcttaccctggttatg |
229 |
Q |
| |
|
|||||| ||||| |||||||||| |
|
|
| T |
26996613 |
taaaggagcttatcctggttatg |
26996635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 108 - 229
Target Start/End: Complemental strand, 3619632 - 3619511
Alignment:
| Q |
108 |
tttagctggaacagcaacaaacccttttggaaatggttactttcaaggtccttctgaagctcctcttgaagctgcttcagcttgtcctggtgtttatggt |
207 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| || ||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
3619632 |
tttagctggaactgcaacaaacccttttggaaatggatatttttaaggtccttctgaagcacctcttgaagctgcttcagtttgtcctggtgtttatggt |
3619533 |
T |
|
| Q |
208 |
aaaggtgcttaccctggttatg |
229 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
3619532 |
aaaggtgcttaccctggttatg |
3619511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 108 - 229
Target Start/End: Complemental strand, 36936222 - 36936101
Alignment:
| Q |
108 |
tttagctggaacagcaacaaacccttttggaaatggttactttcaaggtccttctgaagctcctcttgaagctgcttcagcttgtcctggtgtttatggt |
207 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||| || ||| ||||||||||| |||| |||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
36936222 |
tttagttggaactgcaacaaacccttttggaaatggatatttttaaggtccttctaaagcacctcttgaagctgcttcaacttgtcctgatgtttatggt |
36936123 |
T |
|
| Q |
208 |
aaaggtgcttaccctggttatg |
229 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
36936122 |
aaaggtgcttaccctggttatg |
36936101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 108 - 229
Target Start/End: Complemental strand, 30272760 - 30272639
Alignment:
| Q |
108 |
tttagctggaacagcaacaaacccttttggaaatggttactttcaaggtccttctgaagctcctcttgaagctgcttcagcttgtcctggtgtttatggt |
207 |
Q |
| |
|
||||| |||||| |||||||||| |||||||||||| || ||| ||||||||||| |||| ||||| |||||||||||| |||||||| ||||||||||| |
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|
| T |
30272760 |
tttagttggaactgcaacaaaccattttggaaatggatatttttaaggtccttctaaagcacctctcgaagctgcttcaacttgtcctagtgtttatggt |
30272661 |
T |
|
| Q |
208 |
aaaggtgcttaccctggttatg |
229 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
30272660 |
aaaggtgcttaccctggttatg |
30272639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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