View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16952_low_2 (Length: 494)
Name: NF16952_low_2
Description: NF16952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16952_low_2 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 15 - 478
Target Start/End: Original strand, 110345 - 110806
Alignment:
| Q |
15 |
ctaatgatctctctcttttgcttattgattttaatggttatatgtttatgctgatttttattttgagataattcacatgtcaataagttaacaacaatct |
114 |
Q |
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|||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
110345 |
ctaacgatctctttcttttgcttattgattttaatgcttatatgtttatgctgatttttattttgagataattcacatgtcaataagttaacaacaatct |
110444 |
T |
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| Q |
115 |
tgaggattttattaattgtttaatcgctgccgatgctagggtttccatcaagttgctatctgcgaatggaggaacgtataataaaatggctgaaattaag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
110445 |
tgaggattttattaattgtttaatcgctgccgatgctagggtttccatcaagttgctatctgtgaatggaggaacgtataataaattggctgaaattaag |
110544 |
T |
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| Q |
215 |
cgtgttaaagagaagatcacagtttgtgttaaccggtgaaattgcagagaatttaattttgatcgtgatatttgttgaaatgaaatcctgtgttcaattg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
110545 |
cgtgttaaagagaagatcacagtttgtgttaaccggtgaaattgcagagaatttaattttgaccgtgatatttgttgaaatgaaatcctgtgttcaattg |
110644 |
T |
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| Q |
315 |
ataaagcaagatgcgatggaaatcattgtaagttttgaattattctccctttcaagtcatcgacttagaggtcagttacatgctatactgcttttgtgtt |
414 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
110645 |
ataaagcaagatgcgatggaaatctttgtaagttttgaattattctccctttcaagtcatcgacttagaggtcagttacatgctatactgcttttgtgtt |
110744 |
T |
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| Q |
415 |
gagaaactataagtgtatgctgaaatcggtttgtgtgattctatgatttctttattttgataat |
478 |
Q |
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| T |
110745 |
gagaaactataagtgtatgctgaaatcggttggtgtgattctatgatt--tttattttgataat |
110806 |
T |
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Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 16366321 - 16366212
Alignment:
| Q |
15 |
ctaatgatctctctcttttgcttattgattttaatggttatatgtttatgctgatttttattttgagataattcacatgtcaataagttaacaacaatct |
114 |
Q |
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|||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||| |
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| T |
16366321 |
ctaatgatctctct-ttttgcttattgattctaatgcttatatgtttatgctgattgttattttgagataattcacatgtcaataaatatacaacaatct |
16366223 |
T |
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| Q |
115 |
tgaggatttta |
125 |
Q |
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| T |
16366222 |
tgaggatttta |
16366212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 21189634 - 21189710
Alignment:
| Q |
24 |
tctctcttttgcttattgattttaatggttatatgtttatgctgatttttattttgagataattcacatgtcaataa |
100 |
Q |
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| T |
21189634 |
tctctcttttgcttattgattttaatgcttatatgtttatgctgattgttattttgagataattcacatgtcaataa |
21189710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 9111427 - 9111353
Alignment:
| Q |
24 |
tctctcttttgcttattgattttaatggttatatgtttatgctgatttttattttgagataattcacatgtcaat |
98 |
Q |
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| T |
9111427 |
tctctcttttgcttattgattttaatgtttatatgtttatacttattgttattttgagataattcacatgtcaat |
9111353 |
T |
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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 21185213 - 21185101
Alignment:
| Q |
15 |
ctaatgatctctctcttttgcttattgatt-ttaatggttatatgtttatgctgatttttattttgagataattcacatgtcaataagttaacaacaatc |
113 |
Q |
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|||||||||||||| |||||||||||| || |||||| ||||||||||||||||||| |||||| |||| |||||| ||| | || || ||||||||| |
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| T |
21185213 |
ctaatgatctctctattttgcttattgtttattaatgcttatatgtttatgctgattattatttagagagaattcatatg--actacttttacaacaatc |
21185116 |
T |
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| Q |
114 |
ttgaggattttatta |
128 |
Q |
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| T |
21185115 |
ttgaggattttatta |
21185101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 21184499 - 21184455
Alignment:
| Q |
45 |
ttaatggttatatgtttatgctgatttttattttgagataattca |
89 |
Q |
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| T |
21184499 |
ttaatgcttatatgtttatgctgattattatttagagataattca |
21184455 |
T |
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