View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16952_low_5 (Length: 419)
Name: NF16952_low_5
Description: NF16952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16952_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 11 - 412
Target Start/End: Complemental strand, 14783155 - 14782754
Alignment:
| Q |
11 |
catcaaaatcaaccatcaccatttgtcaacaacaaaaaccacctgcatgcaaatgatcaaaaatccattacaaacaaaaggtacatgccacttttgataa |
110 |
Q |
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| T |
14783155 |
catcaaaatcaaccatcaccatttgtcaacaacaaaaaccacctgcatgcaaatgatcaaaaatccattacaaacaaaaggtacatgccacttttgataa |
14783056 |
T |
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| Q |
111 |
tcaactttctcttactctttgttggttcaacctcatcaagtttactctcaaaatactatttcatccacaaaggttcaagcaaatgggtctcaacttgggt |
210 |
Q |
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| T |
14783055 |
tcaactatctcttactctttgttggttcaatctcatcaagtttactctcaaaatactatttcatccacaaaggttcaagcaaatgggtctcaacttgggt |
14782956 |
T |
|
| Q |
211 |
tcaatgtgctggcttccctctcttgatcatcccaatttttctcccttatctcttcaatctcaccaaaagaaaccctttcactgatttcacaccaaaaatg |
310 |
Q |
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| T |
14782955 |
tcaatgtgctggcttccctctcttgatcatcccaatttttctcccttatctcttcaatctcaccaaaagaaaccctttcactgatttcacaccgaaaatg |
14782856 |
T |
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| Q |
311 |
ttaaccctatcaatttttgttggtatcatgttagggtttaacaatcttttaatctcatggggtgttgcatatctacctgtttcaacttcagcacctttgc |
410 |
Q |
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| T |
14782855 |
ttaaccctatcaatttttgttggtatcatgttagggtttaacaatcttttaatctcatggggtgttgcatatctacctgtttcaacttcagcacttttgc |
14782756 |
T |
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| Q |
411 |
ta |
412 |
Q |
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| T |
14782755 |
ta |
14782754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 65 - 215
Target Start/End: Complemental strand, 14775227 - 14775077
Alignment:
| Q |
65 |
gatcaaaaatccattacaaacaaaaggtacatgccacttttgataatcaactttctcttactctttgttggttcaacctcatcaagtttactctcaaaat |
164 |
Q |
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|||||||| |||| || |||||||||||||| || |||||| | || |||| || || |||||||| || ||| || ||||||||||||||||| | |
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| T |
14775227 |
gatcaaaagtccaccactaacaaaaggtacataccccttttggttattaactaccttttgctctttgtagggtcactttcttcaagtttactctcaaagt |
14775128 |
T |
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| Q |
165 |
actatttcatccacaaaggttcaagcaaatgggtctcaacttgggttcaat |
215 |
Q |
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| T |
14775127 |
actattttatccataaaggttctagtagatgggtttcaacttgggttcaat |
14775077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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